Primulina tabacum: 142553963
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Entry
142553963 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142553963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142553963
03041 Spliceosome [BR:
ptab03041
]
142553963
03009 Ribosome biogenesis [BR:
ptab03009
]
142553963
03016 Transfer RNA biogenesis [BR:
ptab03016
]
142553963
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142553963
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142553963
Spliceosome [BR:
ptab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142553963
Complex C
U4/U6.U5 tri-SnRNP related factors
142553963
Ribosome biogenesis [BR:
ptab03009
]
Eukaryotic type
Pre-60S particles
Helicases
142553963
Transfer RNA biogenesis [BR:
ptab03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142553963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
142553963
NCBI-ProteinID:
XP_075520650
LinkDB
All DBs
Position
8:complement(35329753..35341601)
Genome browser
AA seq
997 aa
AA seq
DB search
MGSVKRKSLEAAASEDYEAPTKKQQQENGLMKTIDEPVACQHDVSYPEGYLPRKALNSGS
IDIENSKPAKEFPFTLDPFQLEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLQHKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIR
EVAWTIFDEVHYMRDRERGVVWEESIVMAPKKSRFVFLSATVPNAKEFADWVAKVHQQPC
HIVYTDYRPTPLQHYIFPSGSDGLYLVVDEKGKFREDSFQKALNALVPINEERRKDNGNR
HKGLVGGKAGEDSDIFKMVKMIIIRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVN
IEIIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPVLKEVIEILFQEGFIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV
DENLEPSTAKLMLKGSADPLNSAFHLNYNMLLNQIRSEDGDPETLLRNSFYQFQADRAIP
DLEKQAKVLEKERESMIIEGEDSLEDYYSLLEQYKTLKKDVRDIVLLPKHCLPFLQPGRL
VCIQCTKNDENSSSFSVKDDVTWGVIINFVRIKEVSEEDANKKPEDSSYMVDVLTRCRMQ
KDELAKKTIRIIPIKEPGEPAVISIPLSQIDCLSSIRIVIPKDLLPVKARENTLKKVSEV
LNRFVKEGTPLLDPEDDMKVQSSSYRKAARRIEMLENLFEKHEIAKSPLVEQKLKVLHTK
KELTAKIKSIKRMMRSSSVLAFKGELKARKRVLRRMGYITSDDVVELKGIVACEISSADE
LTLTELMFNGVLKDITVEEMISLLSCFVWREKLQEAQKPRDELEMLFMQLQDTARKVAKV
QLECKVEIDVDSFVSSFRPDVMEAVYAWAKGSKFYEIMEMSQVFEGSLIRAIRRLEEVLQ
QLIQAAKSIGETELEVKFEEAVTKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagaggaagtcgttggaagcggcggcgagcgaggattacgaggctccg
acgaaaaagcagcagcaagagaatggtttgatgaagacaattgatgagccagtggcatgc
cagcatgatgtctcttatccagaggggtatttgcctcggaaagctttgaattcaggttcg
atagacatagaaaactcgaagcctgccaaagagttcccgtttaccctcgacccttttcag
ttggaagcaatcaaatgtttagacaatggcgaatctgtcatggtgtctgcacatacatct
gcgggaaagactgttgtggcattgtacgcgattgcgatgtcattacagcacaagcaacgt
gtgatatatacgtccccaattaaggctctcagtaatcagaagtacagagagttcaaagaa
gagttttcggatgtggggttgatgacaggtgatgtcactattgatcccaatgcttcctgc
ttggtgatgactacagagatctggcgaagcatgcagtacaaaggatctgaggttataagg
gaggtagcatggacaatttttgatgaggtgcattacatgagagacagggagagaggtgtc
gtgtgggaagagagcatcgttatggccccaaagaaatcccggtttgtgttcctctcagct
acagttcccaatgcgaaggaatttgctgattgggttgcgaaggtgcaccaacaaccatgc
catattgtttacacggattataggcctacaccgcttcaacattacatattcccttctgga
agtgatggtctttatttggtggtcgatgaaaaaggaaagtttcgtgaggacagctttcag
aaagctctaaatgcactagttcctattaatgaagaacgaaggaaggataatgggaatcgg
cataagggtttagttggtggaaaggctggcgaggatagtgacatatttaaaatggtgaaa
atgattatcatacgccagtatgatcctgtcatatgtttcagtttcagcaaaagagagtgt
gaatttcttgcaatgcagatggcaaaaatggatctgaacaatgatgatgagaaggtgaat
attgaaattatattttggagtgctatggatatgctatctgacgatgataaaaagctgcca
caggtctcgaacatgcttcccttattgaaaagaggaataggtgtgcatcattctggtttg
cttccagtattgaaggaagttattgaaattctattccaggaaggattcatcaagtgtttg
tttgcgacagagaccttcagcatagggctgaacatgcctgccaaaactgttgtcttcacg
aatgtccgcaaatttgatggagataaatttaggtggatatctagtggggaatacatacaa
atgagtggtcgtgctggtcgccgtggaattgatgaacgtggcatctgtatcctaatggtt
gacgagaatctagaaccttctacagctaagctgatgttaaaaggaagtgctgatcctttg
aacagtgcattccacttgaactacaatatgttattgaatcaaatccgaagtgaagatggt
gatcctgagactttgctccgtaattctttctatcaatttcaagcggaccgagccattcct
gatcttgaaaaacaagcaaaggtccttgaaaaggagagggagtcgatgataatagaaggg
gaagatagcttggaggattattactctttgctagagcaatataaaaccttgaaaaaggat
gtccgtgacatagtgctcttgccaaaacactgcttacccttcctgcagcctggcaggctt
gtatgcatccaatgtacaaagaatgatgagaattcatcttctttttctgtcaaggatgat
gtgacatggggagtcataataaattttgtgaggattaaagaagtttctgaagaggatgca
aataagaagcctgaagactcgagctatatggtggatgttctcacaagatgtcgtatgcag
aaggatgaacttgctaaaaaaacaatcaggatcattccaattaaggagcctggcgagcct
gctgttatttcaattcccctttcacagattgattgcttgagtagtatccgaatagtaata
ccaaaagacctactgccagttaaggctcgagaaaatacactgaagaaagtgtctgaagtt
ctcaatagatttgtgaaagaaggcacgcctctcctagatcctgaagatgacatgaaggtt
caaagcagctcttataggaaggcagcacgtagaatagaaatgttggagaacctttttgaa
aagcatgaaattgccaaatctccactggttgagcaaaagctaaaagttctacacacaaag
aaagaacttactgccaaaataaaatctataaagagaatgatgcggtcttcttcagtatta
gcattcaaaggtgaacttaaagcaaggaaaagagtactgaggagaatgggatatattacg
agtgatgatgttgtggagctgaagggcatagttgcatgtgaaatcagcagcgcagatgaa
ttgacactgacggaacttatgttcaatggggttctgaaggatattacggtggaggagatg
atatctcttctttcgtgttttgtgtggcgagaaaagctacaggaagcccaaaagcctcga
gatgaacttgagatgcttttcatgcaattacaggatacagcacggaaagttgccaaggtt
cagctcgagtgcaaggttgaaatcgatgttgatagttttgtgagttctttcagaccagat
gttatggaggcggtttatgcttgggcaaaaggatccaaattctatgaaattatggaaatg
tcacaggtgtttgagggaagcttgatcagggctatcaggaggttggaggaagtccttcag
cagctgattcaagcagctaaatcaattggagaaacagagcttgaagtaaaatttgaagaa
gctgtcaccaagatcaagagagatattgtctttgcagcatcattgtacttgtag
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