Primulina tabacum: 142553983
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Entry
142553983 CDS
T11246
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142553983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptab03021
]
142553983
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142553983
Transcription machinery [BR:
ptab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
142553983
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
142553983
U7-dependent histone pre-mRNA processing factors
142553983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Motif
Other DBs
NCBI-GeneID:
142553983
NCBI-ProteinID:
XP_075520689
LinkDB
All DBs
Position
8:complement(35857916..35865155)
Genome browser
AA seq
692 aa
AA seq
DB search
MASTGQPSPSSKRSATNDGDELIITPLGAGSEVGRSCVYMTYKGKNIMFDCGIHPAVSGM
AALPYFDEIDPSKIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY
VKVSKVSVEDMLYDEQDIIRSMDKIEVIDFHQTLEVNGVRFWCYTAGHVLGAAMFMVDIA
GVRVLYTGDYSREEDRHLRAAELPQFSPDVCIIESTYGVQNHQPRHIREKLFTDVIHSTV
SQGGRVLIPAFALGRAQELLLILDEYWSSHPELHNVPIYYASPLAKRCMAVYQTYINAMN
ERIRNQFASSNPFDFKHISPLKSLDEFRDVGPAVVMATPGGLQSGLSRQLFDRWCADKRN
ACVIPGYVVEGTLAKTIINEPKEVTLASGLTAALNMQVHYISFSAHADYNQTSTFLKELM
PPNIILVHGEANEMGRLKQKLLSVFADGNTKIITPKNCQSVEMHFNSQKMAKTIGKLAEE
TPAVGGIVSGLLVKKGFTYQIMAPEDLHIFSQLSTGNILQRITIPYSGAFGVIKYRLKKI
YESVESSSDEESGVPTFRVHDRVTVKQESDNHVSLHWTADPVSDMISDSIVALVLNASRE
LPKVVVESEQEPSEDERTKKADKIIHALLVSLFGNVKYESDGRLVIDVDGNLARLNKQNG
EVESENEGLKERVKTAFRRITAAVKPIPLQGS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacagggcaaccatctccttcttcaaagagatctgcgaccaatgacggggat
gagctcattatcacacctttgggagcaggcagcgaagtggggcgctcctgtgtttacatg
acttacaaggggaaaaatattatgttcgactgtggcattcatccggctgtctcaggcatg
gctgcgctgccttattttgatgaaatagatccttcaaagattgacgttcttcttgttact
cattttcacttggaccatgctgcttctctcccgtattttctggagaagaccacattcaag
ggccgagttttcatgacacatgcaactaaggcaatttacaagttgcttttgaccgattat
gttaaagttagcaaggtttcggttgaagatatgctgtatgacgaacaagacattatccgt
tcaatggataaaattgaggttattgactttcatcagactctggaggttaatggtgtccgc
ttttggtgttatactgctggtcatgtgcttggtgctgccatgtttatggttgacattgct
ggtgttcgagtactctacactggtgactattcacgagaagaagaccgacaccttcgtgct
gctgagctcccacaattctcacctgatgtttgcattattgaatcgacttatggtgttcaa
aatcaccaacctcgtcatatacgcgaaaagctttttactgatgtcattcactctacagtt
tctcaaggtggccgagttctgatccccgcttttgcccttggccgcgcacaagaactacta
ctgatccttgacgagtactggtcaagccatcctgaactccacaatgtccctatatattat
gcttctcctcttgcaaaaagatgcatggccgtttatcaaacctacattaatgcgatgaat
gagagaatccgcaaccagttcgccagttcaaatccatttgatttcaaacacatttctcca
ttaaaaagtcttgatgaatttcgtgatgttggcccagccgtggtgatggctacccctggt
gggcttcaaagtgggttgtcgagacagctgtttgacagatggtgcgcagacaagagaaat
gcttgtgttatacctgggtatgttgtcgaagggacgttggcaaaaaccattattaacgaa
cctaaagaagttacactagcaagcggtttgacggctgctctgaacatgcaagtccactat
atttccttctcggctcatgcagattataaccaaacgagcacatttctgaaagagcttatg
cctcccaacatcatcctggttcacggtgaggcaaatgagatgggacgtctcaaacagaag
ctcctctccgtgtttgccgatggaaacacaaaaatcataaccccaaagaactgtcagtct
gtggaaatgcacttcaactcccagaaaatggcaaaaactataggaaagttagccgaagaa
acacctgccgttggtggaatcgtttccggtttgcttgtcaaaaagggcttcacttatcag
atcatggcacccgaagatctccacatcttctcccaactatctaccggtaacatacttcag
aggatcacaatcccttattccggtgcctttggtgttataaaatacaggctcaaaaagatt
tatgaaagtgtagaatcctcgtcagatgaagaatctggggttccaacttttcgagtgcac
gacagagtaacagtcaagcaagaatcagataatcacgtttcactgcactggacagcagat
cccgtcagtgatatgatctcagactccattgttgctctggttctaaatgctagtcgggaa
ttgcctaaggtggtggtcgagtccgaacaagaaccaagcgaagatgaaagaaccaagaaa
gcggacaaaatcattcatgcactccttgtatctttatttggaaatgtgaaatatgagagc
gacgggagactggtgattgatgttgatgggaatttggcacgtctcaacaaacaaaacggt
gaagtcgagagtgagaacgaaggccttaaagaacgggttaagactgcatttagacgaatc
acggccgcggtgaaaccaatccctcttcaaggatcctag
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