Primulina tabacum: 142554191
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Entry
142554191 CDS
T11246
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
ptab Primulina tabacum
Pathway
ptab03015
mRNA surveillance pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142554191
09123 Folding, sorting and degradation
03018 RNA degradation
142554191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142554191
03041 Spliceosome [BR:
ptab03041
]
142554191
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142554191
mRNA cycle factors
Stress granule specific factors
142554191
Spliceosome [BR:
ptab03041
]
Complex C
Other components
Complex C specific factors
142554191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
RRM_7
RRM_occluded
RRM_MARF1
PABC_AtC3H46
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
142554191
NCBI-ProteinID:
XP_075520983
LinkDB
All DBs
Position
8:complement(40811806..40816248)
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AA seq
644 aa
AA seq
DB search
MAAPVQMQPQVQVVNAVPSGGAPFVTSLYVGDLDANVTDSQLYDLFIQMGDVVSVRVCRD
LTSRRSLGYGYVNYGNPQEAERAMEELNFTPLNGKPVRVMYSHRDPSMRRSGAGNIFIKN
LDKDIDHKGLHDTFSAFGNILSCKVVTNSSGQSMGYGFVQYAGEESGQKAIEKLNGMLLN
GKQVYVGPFLRKQEREMSVNKTIFNNVFVKNLSESTTEEDLKKTFGEFGSITSAAVMRNE
DGTSRCFGFVNFDNAEDASRAVDSLNGLKFDNKEWYVGRAQKKSEREIELKHRFEQTVKE
TVDKSQGLNLYIKNLDDSISDEKLKELFSSFGSITSYKVMRDPKGISRGSGFVAFSSPDE
ASRALSEMNGKMIASKPLYVALAQRKEDRRARLQAQFAQMRPISVMPTATPRMPMYSPGG
PGLGQQIFYGQPPPAMLPPQPGFGYQQQLVPGMRPGGPLMPNMFVSMVQQGPQGPRPGGR
RSNGVPMQQGPQPVPVMQQPMLPRGRGYRYPPVRSIPDVSLQGMAGSMIPVPYEMGGMPL
REAGISQPIPIGALASALANASPTEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTE
VLHLLESPEALKAKVAEAMDVLRNVSQQQAGNPADQLASLALND
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcctgttcagatgcagcctcaggtccaggtggtgaatgcggtaccctctggt
ggtgcgccgttcgtgacgtcgctttacgtcggtgatctcgacgcgaacgtgacggattcg
caattgtacgatttgtttatccagatgggagatgtggtttctgttagggtttgtagggat
ttgactagccggcgttcacttggatatggctatgtcaactacggcaaccctcaagaagct
gagagagcaatggaggagctgaacttcactcctctcaatggaaagccggttagggtaatg
tattctcatcgagaccctagcatgcgtagaagtggtgctggaaatatctttattaagaat
ttggacaaggacatcgatcataaaggtcttcatgatacattttctgcatttgggaacatt
ctttcttgcaaagtggttacaaattcttctggtcagtcgatgggctatggctttgtgcaa
tacgctggtgaggaatccggtcagaaggctatcgagaagctcaatggcatgctactgaat
ggaaaacaagtctatgtgggacctttcctgcgcaagcaagaaagagagatgtcggtaaac
aaaacaatatttaataatgtgtttgtgaagaatttatctgaatcaacaactgaagaagat
cttaagaagacatttggtgaatttggatctataactagtgcggcagtgatgagaaatgaa
gatggaacatcaagatgctttggatttgtcaactttgacaatgcagaggatgcttctaga
gctgttgattctcttaatggcctgaaatttgataataaagaatggtatgttggaagagct
cagaagaaatctgagagggaaatagaattgaaacatcgttttgagcagactgtaaaggaa
acggtcgacaaatcccaaggactaaacctgtatatcaaaaatcttgatgatagcatcagt
gatgagaagctcaaagaattgttctcttcatttggatcgataacgtcatacaaggtgatg
cgagatcctaaaggaataagcagagggtcaggatttgttgcattctcctcacctgatgag
gcatctagagctctttctgaaatgaatggtaagatgattgctagcaaacctctttatgtt
gcacttgctcaaaggaaggaggatagaagagcacgtttgcaggctcaatttgctcaaatg
aggccgatttctgtcatgcctactgccactcctcgcatgcctatgtactcccctggtggc
cctggcttagggcagcaaatattttatggacaacctccgcctgccatgctcccaccccag
cctggatttgggtatcaacagcagcttgttcctggtatgaggcctggtgggcctctcatg
ccaaatatgtttgtgtctatggtccaacaagggcctcaaggtccacgtcctggtggtagg
cgttccaatggtgttcctatgcaacaaggcccacagccagttcctgttatgcagcagccg
atgcttcctagggggcgcggctatcgctacccccctgtgcgtagcattcctgatgtctct
ttgcaagggatggctggaagcatgattcctgtcccttatgaaatgggtggcatgcctttg
cgtgaagctggaatctctcagcccattccaattggcgcgttggcatctgctcttgcaaat
gcttcacccacagaacagcggacgatgcttggtgaaaatttgtatccacttgtggaacaa
ttggaaccagagatggcagccaaggtgacaggcatgctattggagatggatcagactgag
gttttgcacttgttggagtcaccagaggctcttaaggctaaggttgcggaggcaatggat
gtcctgcgaaacgtgtctcagcagcaggctggcaaccctgccgaccaattggcttctctg
gctttgaatgattga
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integrated database retrieval system
