Primulina tabacum: 142554777
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Entry
142554777 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ptab Primulina tabacum
Pathway
ptab03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142554777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142554777
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
142554777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF1985
Helicase_C
ResIII
MAP
Motif
Other DBs
NCBI-GeneID:
142554777
NCBI-ProteinID:
XP_075521568
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All DBs
Position
8:complement(39645026..39657562)
Genome browser
AA seq
1436 aa
AA seq
DB search
MYAATEMYYGDASAKRFPATTPSEERVDLRLGRHKLGRPTSSTQAWVDQKTFFGRPTLGS
TESCVDRVDPPKFSIYFSNIIDTGSDELWMVVRKKPVRFSLIEYCLITGLDCAIEPEDLP
YGGVFGTRHFAGKSKIVLNDLEAKISVQVQNETGIDVEKLKMASLYFCCAVFGEGTKKKT
IKINPKYLRLVDDLDRFNTYPWGRIAYRVAVRCLKKDLLGRYTHLTEAHGRKEVDGTFLV
GGFVLPMQILAYECYPSVAQKFAKRRDMNGLMLPRIFQWVTNTWPSNHAPSAVDVSAAFG
DCAIDFLLILRPMRSSLGYSSCGGRVKQSYVASTLWNLPQSGTRLYLRMVPAPVLLMPLD
PAPAPVSSIRTGPRVHFGLNTSRRPSPLEHRFERRLTALEDSVTSLRLEMRAGFIETRAS
IRHVDLAFDELRSSLTEQIRAGFAEIRSHTPGVAENRSSTPVREERYYSIAYSRRRKRKS
SETDFGVDDNMAREIGSSSQAHPQPIFEPDLPTITEESSEDIQVTPDAVMSCGEATTSRD
LFQKGQKRIKLNEGIGYNDSTFIASWRFESEQKRKNSCSKLSDYSDPLWQSNCWLEELDS
GKFGSVTNDIKELLARRKKLLDSHYGEDSSLPYRCSDVQNKMVPRTTETAEPDVIDLDDN
QVDESNALVQKFATSVQPPHLAGPVVIIDLDDDNGVRSENFTSPYMEVNLNPSGKLLIKD
FVEQNFDRRQSSGEGNVCMSGETQSLEGKSASISGTDDDMEMDESSEISDTNSDGLGGIW
NEMTVALECSKEVNEVPDEYEAEGEIECQHTLILKDDIGDVCRICGVIKRGIETIIEYNF
SKVWIFNGSRTTRTHHYEGRTSRYIEEVFPDGFKPSGCDFTAAEIYPHPRHKKEMKPHQV
EGFNFLVSNLVVENPGGCIMAHAPGSGKTFMIISFLQSFMAKYPPARPLVVLPRGILAIW
KKEFIRWQVEDIPMYDFYSVKADSRAQQLEVLKQWSEVRSILFLGYKQFSSIVCDTDNGK
TAVACQEILLLCPSILILDEGHTPRNQDTDVLTSLERVQTQRKVVLSGTFYQNHVKEVFN
ILNLVRPRFLKMETSKAVKRRILGRAKISTRRNLMKSGRENEFYELIEHTLLKDENYTRK
VTVIQDLREMTKKVLHYYKGDNLDELPGLVDFSVFLHLSPWQQKEVKELTKLGRKFTINA
QGSAIYAHPKLKALSQNSGVKDRIDEGKIDTILEKLDVREGVKSKFYLNLLQLCASNGEK
LLVFSQYLLPLKFLERLTSKMKGYRIGIEMFMITGDSDVETRESYMEKFNTSADAKVFFG
SIKACGEGISLVGASRIIIFDVHLNPSVTRQAIGRAFRPGQVRKVYTYRLIASGSPEEAD
HTTCFRKESVAKLWFEWDEFNGCQNLEMETVNVNDCGDLFLEMERLNEDVTAVFKR
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctgctactgaaatgtattacggggatgcctctgcgaaaaggtttccggccact
actccaagcgaagaaagggtcgacctacgcttgggtcgacacaagcttggtcgacccacg
tcatcgacccaagcgtgggtcgaccaaaaaacgttttttggtcgacccactcttgggtca
accgaatcttgtgtcgaccgggttgacccacccaaattctccatttatttttctaatata
attgatactggtagtgatgagttgtggatggtcgtgcgcaagaagccggttagattttct
ttgatagagtattgtttaataaccggtctcgattgcgctatagagcccgaagatctacca
tatggaggtgtctttggcaccagacactttgccggtaagtctaagattgttttgaatgat
ttggaggcaaagatcagtgtccaagtgcagaatgagactggtatagatgtggagaagtta
aagatggctagtctttacttctgttgtgccgtcttcggtgaggggactaagaaaaagacg
atcaagatcaaccctaaatacttgaggcttgtagatgatttggataggtttaatacttat
ccttggggtagaatagcttatcgtgttgcggtccgatgtttgaagaaggaccttttaggg
cgatatactcacctcaccgaggcacatggtcggaaagaagttgatggcaccttccttgtc
ggtggttttgtgctgcctatgcagatcctcgcttatgaatgttatccgagcgtggcacaa
aagtttgcaaagagaagagatatgaacggtttgatgttgcccaggatatttcagtgggtg
actaacacgtggccctcaaaccatgccccatctgctgttgatgtcagtgcagcctttggt
gactgtgccatagattttttgttgattctgcgcccgatgcggtcatcactcgggtactcg
agctgtggaggcagggtcaaacagtcatatgtagcgagcaccctctggaatctccctcaa
tccggcacacgcctttatcttcggatggttccagcacccgttctgctcatgccgctagat
ccagctccagcaccggtttcttccatacgtacgggtcctagagtccactttggactcaat
acttcccgccgcccatcacccctggagcatcgtttcgagaggcggttgactgcattggag
gattccgttacgtctttgcgtcttgagatgagagcaggatttattgagaccagggcgagt
atcaggcatgtagatctggctttcgatgagttgagatcgagtttgaccgaacagattaga
gcgggttttgctgagatcaggtctcacacgccaggtgttgctgagaataggtcttcgacg
ccagtgcgtgaggagagatattatagcatagcctatagcagaaggcggaagaggaaatca
tccgagacagattttggtgtagatgataatatggctagggaaattggcagtagtagccaa
gcacacccacaaccgatatttgagcctgaccttccaaccataacagaggaatcctccgaa
gatattcaagtgactcctgatgcggttatgtcatgtggcgaagcgaccacgtcgagagat
ttgttccaaaaagggcagaaaaggataaaattaaatgagggaattgggtacaacgacagc
actttcattgcttcatggcgatttgagtctgagcagaaaaggaaaaattcatgttccaaa
ctttcagattactctgatccattatggcagtcaaactgttggcttgaagagttggattct
ggaaaatttgggagtgtaaccaatgatattaaggagcttcttgctcgaaggaagaagtta
ttggactctcactatggagaggattcttcactaccgtacaggtgttctgatgtgcaaaat
aaaatggtgccaaggacaactgaaacagctgaacctgatgtcatcgaccttgatgataat
caagtagatgaaagtaatgctttagtccaaaagtttgctacatctgtgcagccaccccat
ctggcgggtccagttgttatcattgatctagatgatgacaatggtgtcagaagtgagaac
tttacttctccatatatggaagtgaacttgaatccttctggaaagcttcttattaaggat
tttgtcgaacaaaattttgatcgacgccaaagttctggagaaggaaatgtatgtatgtct
ggcgaaacccaatccttagaaggtaaaagtgcgtctatttctggtacggatgatgacatg
gagatggatgaaagtagtgaaatttctgacaccaattctgatggtctgggtggcatttgg
aatgagatgacagttgcattagagtgttcgaaggaagtcaatgaagttcctgatgaatat
gaagctgagggtgaaattgaatgccaacatactttgatactgaaagatgatattggtgat
gtctgccgcatttgtggagtaattaagagaggaatagagacgattatcgagtataacttc
tccaaggtatggattttcaacggaagtcggaccacaaggactcaccattacgaagggcgt
acatccagatacatagaagaagttttcccagatggatttaaaccatctggttgtgatttc
actgctgctgaaatctatccacatccacgacacaagaaggagatgaagccacatcaagtt
gagggattcaattttctagtaagcaacttggtggtggagaatcctggaggttgtattatg
gcgcatgcccctggttctggaaagacatttatgataatcagtttccttcagagtttcatg
gcaaaatatcctcctgccagacctctagttgttctgccgaggggaattttggccatttgg
aagaaagaatttattagatggcaagttgaagacataccaatgtacgacttctactccgtc
aaagctgatagtcgtgcacagcagcttgaagttctgaagcaatggtcagaagtgaggagc
atattgtttttgggttataaacagttctcctctattgtatgtgacactgataatgggaaa
actgctgttgcatgccaagagattttactgctatgtccttcgattctcattttggatgaa
gggcacactcctcgaaaccaggacactgatgttttaacctcccttgagagggttcagact
caaaggaaggttgttctttctggaacattttatcagaaccatgtaaaagaagttttcaat
attttaaaccttgttcgcccaaggtttttgaaaatggagacatctaaagcagtgaagagg
cgtatcttgggcagggcgaaaatttccacccgtaggaacttgatgaaaagtggtagagag
aacgaattctatgaattgatagagcacaccctgttaaaagatgagaactacactaggaaa
gtgactgtcatacaagatctccgtgaaatgacgaaaaaagtcttgcactattacaagggt
gacaatttagatgaacttccaggacttgtggatttttcagtgtttctccatctcagtccc
tggcaacaaaaagaagttaaagagctaacaaagctgggaagaaagttcacaatcaatgca
caaggcagtgcaatatatgcgcatccaaagttgaaggctctctcccagaattctggtgtt
aaagatagaatcgacgaggggaaaattgataccatattggagaaactggatgtgagagaa
ggtgttaagtctaaattctacctaaatctcctccagctatgtgcatctaacggcgaaaag
ttactggttttcagccaatatcttctgccccttaaatttctcgagagattgacttctaaa
atgaagggttacagaattggtatagagatgttcatgatcacaggtgactcagatgtggag
actcgagaatcttacatggaaaagttcaatacttcagctgacgcgaaagttttttttggc
tcaattaaagcatgtggtgaaggaatatcccttgtaggggcgtcacgcattataatattt
gatgttcacctaaacccttctgtcacacgacaagcaatagggcgagcattcaggcctggc
caggtgaggaaggtttatacatataggttgattgctagtggctccccagaggaagctgat
cataccacctgcttcaggaaggagtccgtggcaaaattgtggttcgaatgggacgaattt
aatggttgccaaaaccttgaaatggaaactgtcaatgtaaatgattgtggagacttgttt
cttgaaatggaacggttaaatgaagatgtgactgcagttttcaaaaggtaa
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integrated database retrieval system
