Primulina tabacum: 142555030
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Entry
142555030 CDS
T11246
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ptab Primulina tabacum
Pathway
ptab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142555030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142555030
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142555030
mRNA degradation factors
5'-3' decay
Decapping complex
142555030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
142555030
NCBI-ProteinID:
XP_075521787
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All DBs
Position
1:complement(58461469..58467444)
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AA seq
834 aa
AA seq
DB search
MERSDEKDFTDFSDPSSSSISDSALFDASQYDFFGNDVIGDVEIGCLEDEEAGVRVIGGG
FGGDEEAGVPVIGGGFGGDVELHQYHLFDKDEGSGFGSLSDMDDLTTTFAKLNKVVSGPR
HPGVIGDRGSGSGSFSRESSSATEWARETDFPDWLDHHMSDSECYEESKRWSSHPRHSSI
YHPEPKPLYRASSYPEQQPQQLQHYNSEPILVPESSFTSFPLPVSQQALLSNSHHLNFSS
LTGGTQSPLSALNNSALSNRSLSLGGIPRGFHNSISNMSLLASPNISCNARLQNHWNSHA
GLLHGDNSILLNNILQHQYQNGLLPSQLMSPQQQRLQFSFQPSLAHFSAMQSRLFNTFPT
PAPFSKSGSIDKRELKPKPVQKGRHTVRFSDQGSDASSKKSDGNISHFRSKHMTAEEIES
ILKLQHAATHGNDLYVDDYYHQASIAKKSSETRSKYRFCPSHSKEQSSRSRNSSESQPHL
HVDVLGRVCFSSVRRPHPLLEVDPPPIACGDVSANQKLSEKPLEQEPMLAARVTIEDGLC
LLLDVDDIDRILQFTQPQDGGKQLRRKRHTLLEGLAASLQLVDPLGRGGNTVGLSPKDDT
VFLRLVSLSKGRKLISRFLQLLLPGSELARIVCMAIFRHLRFIFGILPSDPEAIITVNKL
AETVSTCVNGMDLNSLSACLAAVVCSLEQPPLRPVGGPAGDGASVILKTVLERANHLLKD
PHLARNFCIPNPTLWQASFDAFFGLLTKYCVNKYDSIVQSFITQNPPHALVIDSEAANAI
SREMPVELLRASLPHTDENQKKLLLNFAQRSMPVTGFSTHGGSSSQINPESVKG
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgatgaaaaagattttacggacttctccgacccgtcaagcagctccata
tctgatagcgcgctgtttgatgcgtcccagtatgatttttttggaaacgatgtaataggt
gatgtggaaatagggtgtttggaagatgaagaagctggtgttcgtgtgattggaggtgga
tttggtggagatgaagaagctggtgttcctgtgattggaggtggatttggtggtgatgtg
gagttacaccagtatcatctttttgataaagatgagggatcaggatttggatcattatct
gatatggatgatttgactactacatttgcgaagttgaacaaagttgtttctggacccaga
catcctggagtaatcggtgatcggggatctggatctggatcgttttcaagggagagttca
tcagctacagaatgggcacgagagactgactttcccgattggcttgaccatcacatgtct
gactcagaatgttacgaggaaagtaagagatggtcatcgcatcctcgtcactcttcgata
tatcatccagaaccaaaaccattatacagagcatcatcataccctgagcagcagccgcaa
cagctgcaacactataatagcgagcctattttagtacctgagtcatctttcacttccttc
cctctcccagtatctcaacaagctctattgagtaattctcatcaccttaatttttcatct
ttaactggtggaacgcagtcacccctctctgcattgaacaactctgcattgtctaatcgt
tctctctcgcttggtggtatcccaagagggttccataatagtatttcaaacatgtcgctc
ctggcctcacccaatatatcatgtaatgcgcgtctgcaaaaccactggaatagccatgct
ggtcttcttcatggggataattcgatcctcttaaataatattttacagcatcagtatcaa
aatggactattaccatctcagctgatgtctccacaacagcagagattacagttttcattt
caaccatcattagcccatttttcagctatgcaatctcgcttatttaatacctttcctaca
ccagcaccctttagtaagtctggttccattgataagagggagttaaaacctaaaccagta
caaaaaggtagacacacagtgcgattctctgaccaaggatccgatgctagtagtaaaaaa
agtgacggtaacatatcacatttcagatcaaagcacatgactgccgaagaaatagaaagc
attcttaaattgcagcatgctgcaacccatggtaatgacttgtatgtggatgattattac
catcaagctagtattgccaagaaatcttctgaaacaaggtcgaaatatcgattctgccca
tctcactcaaaggagcaatcttcccggtctcgtaacagttctgagtcacaaccacatctc
catgtggatgttcttggacgggtatgtttttcttcagttcgcaggcctcacccacttctt
gaagttgaccctcctcccattgcttgtggtgatgttagcgcgaatcagaaattatctgaa
aagcctttggaacaggaaccaatgcttgcagcaagggtgacaatcgaggatggcctatgt
ctacttctggatgtggatgatattgacaggatcttacagtttactcaaccccaagatggt
ggaaagcagcttaggagaaagcgccacactctgctagaaggcttagcagcctctcttcag
ctcgttgacccacttggaagaggaggcaatactgttgggttgtctcccaaggatgatacc
gtgtttcttcgtttggtttctctatccaagggtcgaaaactcatctctagatttcttcaa
cttcttttaccaggtagcgagcttgctcgaatagtctgcatggccattttccgccattta
agatttatattcgggatccttccctctgatccagaagctattattaccgtcaacaaactt
gctgagacagtctctacttgtgttaatggtatggatcttaattcactcagtgcttgtcta
gctgccgtcgtttgttccttggaacagccacctcttcgtccggtaggcggccctgctggt
gatggtgcctctgtcatcttgaaaactgttctcgaaagagcgaatcacttattaaaagat
cctcatttggcccgcaacttctgtataccgaatcctaccctatggcaggcttcatttgat
gccttctttggtcttctgacaaagtactgtgtgaataaatatgacagcattgtgcaatca
tttatcactcaaaatcctccacacgcactggtaattgattcagaagctgcaaatgctata
agcagggagatgcccgtcgaacttttacgtgctagtctcccacacactgacgagaatcag
aagaaactgttgctgaattttgctcagcgatccatgcctgttactggatttagcactcat
ggcggaagtagcagccaaataaatccagaatcagttaaaggttag
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