Primulina tabacum: 142555409
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Entry
142555409 CDS
T11246
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
ptab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142555409
09122 Translation
03013 Nucleocytoplasmic transport
142555409
03015 mRNA surveillance pathway
142555409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142555409
03041 Spliceosome [BR:
ptab03041
]
142555409
Enzymes [BR:
ptab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142555409
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142555409
Spliceosome [BR:
ptab03041
]
Complex C
Other components
EJC/TREX
142555409
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142555409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
142555409
NCBI-ProteinID:
XP_075522377
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All DBs
Position
9:complement(34252459..34256938)
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AA seq
428 aa
AA seq
DB search
MGDNKENDAYEEELLDYEEEDERVTDAVNAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVSVFYGGVSIKIHKDILKNECPHIVVGTPGRILG
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RTAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagataataaggagaacgatgcgtatgaagaagagcttctcgattacgaagaagaa
gacgaaagagtcacggacgctgtcaatgctaaagtaaacggagaatccgctaaaaaggga
tacgttggaattcatagttcaggattcagagacttcctcttgaagccagagcttttacgg
gcgattgtggactcagggtttgaacatccctcagaagttcaacatgaatgcatacctcaa
gctattttgggaatggatgttatctgccaagcaaaatctggtatgggaaaaacagctgtg
tttgtcctttcaactttgcagcagattgaaccggttgcaggtcaagttgctgctcttgtt
ctctgtcacacaagggaactagcttaccagatatgtcatgaatttgagcggttcagcaca
tatctaccggatatcaaagtttctgttttctatggcggtgttagcatcaaaatccacaaa
gatattttgaagaatgaatgccctcacattgttgttggaaccccagggaggatacttggt
ctggctagagacaaggacctttctctgagaaatgtgaggcatttcattttggatgaatgt
gacaagatgctggagtctctcgatatgaggagagacgtgcaggaaattttcaaaatgacg
cctcacgacaagcaagttatgatgttttcggcgacacttagcaaggagattcgaccggtt
tgcaagaaattcatgcaagatcctatggaaatttatgtggatgatgaggccaaattgact
cttcatggtctcgttcagcactacatcaaattgagtgagctggaaaaaaaccggaagctg
aatgatttgctcgatgctctagactttaatcaggttgtcatctttgtcaaaagcgtgaat
agaactgcagagctgaataagttactggtggagtgtaacttcccatctatttgtattcac
tctggcatgtcccaagaagaaagattgactcgatacaagggatttaaagaagggcataaa
agaattcttgtagcaacagatcttgttggtagaggaattgacatagagcgagtaaacatt
gtgattaattatgatatgccagattctgcagacacttatctgcatagggtgggtagagct
gggcggtttggaaccaaaggacttgccatcacatttgtttcttctgcatctgattcagat
gttctcaatcaggttcaagaaaggtttgaagttgatattaaagaacttcctgagcagatt
gatacatctacatacatgccgtcttag
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