KEGG   Primulina tabacum: 142555801
Entry
142555801         CDS       T11246                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
ptab  Primulina tabacum
Pathway
ptab03013  Nucleocytoplasmic transport
ptab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142555801
  09122 Translation
   03013 Nucleocytoplasmic transport
    142555801
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptab03019]
    142555801
   03041 Spliceosome [BR:ptab03041]
    142555801
Messenger RNA biogenesis [BR:ptab03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     142555801
Spliceosome [BR:ptab03041]
 Complex C
  Other components
   EJC/TREX
    142555801
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142555801
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_WDR90_POC16_2nd DSE1_N eIF2A NBCH_WD40 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd TRM82_WD PAC11 DUF7099 CFAP251_N Beta-prop_WDR41 WD_LRWD1 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 142555801
NCBI-ProteinID: XP_075523010
LinkDB
Position
9:complement(37408948..37413231)
AA seq 313 aa
MEESLPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHSKAKDSE
LKGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSAKCSQQVELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGDIFFLTTGNGTVEILAYPSL
KAVDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDMKEMLCIHTFTKLEWPVRTLSF
NHTGEFIASASEDLFIDISNVETGRSIHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFENA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggaatcactgcccttcaaaaacctccacagtagggagtaccaaggccacaagaag
aaggtgcattcagtggcgtggaattgcacgggcacgaaactggcttcaggctctgttgat
cagactgctcgaatatggcacattgaaccccacggtcatagcaaagctaaagatagcgag
ctaaaaggccacgccgatagtgttgatcagttatgctgggatccaaaacatgctgatttg
attgcaactgcatcaggcgataagacagttcgcttgtgggatgctcgtagtgcaaaatgt
tcacagcaggtagagctcagcggggagaacataaatattacctataagcctgatggcact
catatagcagtcggtaacagggatgacgaattaacaattttggatgttcgcaaattcaag
ccaatacataaacgcaagttcaattatgaggtgaatgagattgcatggaacatgacaggg
gacatattctttttaactactgggaatggaactgtagaaatacttgcatatccatccctc
aaggcagttgacacacttatggctcatactgctggttgctattgtattgcgattgaccca
ctgggaagatattttgctgttggaagtgctgactcattggtcagtctttgggatatgaaa
gaaatgctctgtatccacacattcactaaacttgaatggcctgtccggacattgagtttc
aaccacacgggagaatttattgcttctgccagtgaggacttgtttatcgatatttccaat
gttgaaactggaagatccatccaccagattccatgccgggctgccatgaacagtgtggaa
tggaatcctaagtacaacttacttgcatatgctggagatgataaaaacaagtatcaggct
gacgaaggcgttttccggatatttggctttgagaatgcgtag

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