Primulina tabacum: 142556113
Help
Entry
142556113 CDS
T11246
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
ptab Primulina tabacum
Pathway
ptab03013
Nucleocytoplasmic transport
ptab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142556113
03015 mRNA surveillance pathway
142556113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptab03019
]
142556113
Messenger RNA biogenesis [BR:
ptab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142556113
mRNA cycle factors
P-body specific factors
142556113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
142556113
NCBI-ProteinID:
XP_075523493
LinkDB
All DBs
Position
9:complement(39659986..39671371)
Genome browser
AA seq
1193 aa
AA seq
DB search
MEHAEEIGVEHHEKHDDDGRHDDEEANARLEELKKSIEAKMALRQSNLKPERPDSGFLRT
LDSSIKRNTAVIKKLKQINEEQREGLIDELRGVNLSKFVSEAVTAICDAKLKAADIQPAV
QICSLLHQRYTDFAPSLVQGLTKVFAPGKSVEDLDTDKNSRSMKKRSTLKLLLELYFVGV
IEDCSVFINIIKDLTSTEHLKDRDATQTNLSLLGSFARQGRFLLGLPLTGFDILEEFFKE
LNVTADQKKFFRKTFQTYYDASVELLLSEHALLRQMEHENAKILNAKGELNEEHASSYER
LRKSYDHLSRGISSLAEALDIQPPVMPEDGHTTRVTSGEEVLSPVSSKDSSALEALWDDE
DTKAFYECLPDLRAFVPAVLLGESEPKLNEQSPKAQELPTDLAPESEKDQISTLENPEAS
SESEALADDKEGKEKDKQDKDTEKGKEPEKEKGKEKDSERRGENEKDKVKGLDGTNLEAL
LHRLPSCVSRDLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTC
MKDVSSILLQLLEEEFNFLTNKKDQMNIETKIRNIRFIGELCKFKIAPAGMVFSCLKACL
DDFTHHNIDVACNLLETCGRFLYRSPETTMRMSNMLEILMRLKNVKNLDPRQSTLVENAY
YLCKPPERSARISKVRPPLHQYIRKLLFSDLDRFSIENVLRQLRKLPWSECEEYLLKCFL
KVHKGKYSQIHLIASLTAGLSRYHEDFAVSVVDEVLEEIRLGLELNDYGMQQKRVAFMRF
LGELYNYELVDSSVIFDTLYLTLDFGHGTMEQDILDPPEDCFRIRIIITLLQTCGHYFDR
GSSKRKLDRFLIHFQRYILSKGSIPLDIEFDLQDMFVDLRPKMTRHSSLEEVNNALIELE
EHEHRVSSEKARNEKHSDSQKPHSRTSSSSLSTNGQNLVNGTEENDDLYQEIVGETDSDS
GSDTVEHVDRDDEESDGENQDDGCESEDDYEEVGDPASDEDDEVHVRQKVAVVDPQEVAD
FDQELRALMQESLDSRKLEMRSRPTINMMLPMNVFEGSTREHHGRGIEGESGETTDEGTG
EAKEVRVKVLVKRGNKQQTKQMYIPHDCSLVQGTKQKEAAELEEKQDIKRLVLEYNDREE
EELHGGTQPSSWTQSGGRVVNRGNTLDGQNRTSGPRHRHLYHSGAGIYYGRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgctgaagaaattggcgtcgaacatcatgagaaacatgatgacgatggaaga
cacgatgatgaggaagcgaatgctcgtcttgaggaattaaagaagtcaattgaagcaaaa
atggctctgcgacagagtaatttgaaacctgaaagacctgactcaggttttctcaggaca
ttggattctagtatcaaacgcaacacagctgttattaaaaaattaaagcagatcaatgaa
gagcagcgagaaggtttaatagatgagttacgtggtgttaatttgagcaaatttgtcagc
gaagcagtaactgctatttgtgatgcaaagcttaaagctgcagacatacagcctgctgta
cagatctgttctttacttcatcaaaggtacacagattttgcaccttctttagttcaaggt
ctcactaaagtttttgcgccgggaaagtctgtcgaggatttagatacagacaaaaattca
aggtctatgaagaagcggagtactctaaaacttctattggaactttactttgttggagtt
atagaagattgtagcgtcttcataaatatcattaaggatctcactagcactgagcatttg
aaggatcgtgatgcaacccagacaaatttgtctcttctcggtagttttgcacggcaggga
agatttctgcttgggcttccactaactggatttgatattctggaagagtttttcaaggaa
cttaatgttacagctgatcagaagaaattctttaggaagacttttcaaacttactatgat
gcttctgtggaacttctcctgtccgaacatgctttacttcgccaaatggagcatgagaat
gcgaagattttgaatgctaaaggtgaactgaacgaggaacatgcttcatcttatgaaagg
ctccgtaaatcatatgaccatctaagtcgtggcatatcatctttagctgaagcgcttgat
atacaacctcccgtgatgccggaggatggtcatacaaccagagtcacatctggggaggaa
gttctatcgcctgtttccagtaaagattcctctgctcttgaagccctttgggatgatgaa
gatactaaagcgttctacgaatgcctacccgatcttagagcatttgttcctgctgtcttg
cttggagagtcagaaccaaagttgaatgagcaatccccaaaggctcaagaactaccaacc
gatttggctcctgaatcagaaaaggatcagatatctacactggaaaatccagaggcttct
tctgaatctgaagctttagcagatgataaagagggcaaggaaaaggataaacaagataag
gacacagagaagggcaaagaaccagaaaaagagaaaggaaaagaaaaggattctgaaaga
cgaggagaaaacgaaaaggacaaagttaaaggtcttgatggaacaaatcttgaagctttg
ctacataggcttccaagctgtgtgagccgtgatctgattgatcagttgactgttgagttt
tgctatttaaattcaaaatccagtaggaaaaagcttgtgagggctttgtttaatgtccca
aggacgtctttggagctcttgccgtactattcgcgcatggttgctacactttctacttgc
atgaaggatgtctcttccatccttttacagttgttggaggaagaatttaactttttgaca
aataagaaggatcaaatgaatatcgaaacaaagatcaggaacattagatttattggagaa
ctttgcaagttcaaaattgccccagctggaatggtttttagttgtctaaaggcttgtttg
gatgatttcactcaccacaatatcgatgttgcttgcaatctgcttgagacatgtggtcgc
tttctctatcggtcaccagagaccacaatgcggatgtcaaacatgttagagatactgatg
cgcttgaaaaatgtcaaaaacttggatccccgtcagagtactttggtggaaaatgcttat
tatttgtgcaaaccacctgaaagatctgcacgaatctcgaaagtccgtcctcctttgcat
cagtatatcaggaagcttcttttctcagatcttgacaggttttcaattgagaacgttcta
agacagttacgtaagctgccttggagtgaatgtgaagaatatcttttgaagtgttttttg
aaggttcacaagggaaaatatagccagattcatttgattgcatcacttactgctggtctg
agtcgatatcatgaagattttgctgtttctgtcgttgacgaggttttggaggaaatcagg
ctagggttggagttgaatgactatggaatgcagcaaaaacgtgttgcatttatgcggttc
ttgggcgaactgtacaactatgaacttgtagattcatctgttatttttgatactctctat
cttactcttgattttgggcatggaactatggagcaagatatacttgatcctccagaggac
tgctttcgtataagaataattatcacgcttctccagacatgtgggcattattttgataga
ggttcatcgaaaagaaagcttgatcggttcttgattcattttcaacgatacatactgagc
aaaggttccattcccctggatattgagtttgacctgcaggatatgtttgttgatttgcgc
ccaaagatgactcgacactcatctttggaggaggttaataacgctctaattgaacttgaa
gagcatgaacatagagtttcatcagagaaggctcggaatgagaagcactcagactcacaa
aaacctcatagcaggacgagttctagttctttatccacgaatggtcaaaatcttgttaat
ggcaccgaggaaaatgatgatttgtatcaagaaattgttggggagacggatagcgattct
gggagcgacactgttgagcacgttgatcgtgatgatgaagaatcggatggagaaaatcaa
gatgacggttgtgaaagcgaggatgattacgaggaagtaggtgatcctgcttcagatgaa
gacgatgaggtacatgtcaggcagaaggtggcagtggtagaccctcaggaggtggctgat
tttgatcaagaattgcgggctttaatgcaggagagcttggattcgagaaagttggaaatg
cgctctcgcccaacgataaacatgatgttgccaatgaatgtgtttgagggttccactagg
gaacaccacgggagaggaatcgaaggagaaagtggcgagacgactgatgaaggaactgga
gaagctaaggaggtgcgggtgaaagttctcgtgaagcgtgggaacaagcaacagacaaaa
caaatgtatattccccatgattgctccttggttcagggtaccaaacagaaagaggcagct
gagcttgaagaaaaacaagacattaaacggctcgttttagaatacaatgatagagaagaa
gaggaactccatggagggacacaaccatcaagttggactcaaagtggaggcagagttgtg
aaccgaggcaatacgttggatggacagaataggacttctgggccaaggcatcgacatttg
tatcattcaggtgctggcatttactatggcagaagaaggtaa
DBGET
integrated database retrieval system
