Primulina tabacum: 142556257
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Entry
142556257 CDS
T11246
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ptab Primulina tabacum
Pathway
ptab03440
Homologous recombination
ptab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142556257
03450 Non-homologous end-joining
142556257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptab03032
]
142556257
03400 DNA repair and recombination proteins [BR:
ptab03400
]
142556257
DNA replication proteins [BR:
ptab03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
142556257
DNA repair and recombination proteins [BR:
ptab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
142556257
BRCA1-C complex
142556257
NHEJ (non-homologous end-joining)
MRX complex
142556257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
SMC_N
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
142556257
NCBI-ProteinID:
XP_075523757
LinkDB
All DBs
Position
9:complement(40788860..40809722)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGSNGAGKTTIIECLKVACTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAARKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPQTGEKVCLSYRCADMDREIPALMGVSKAIIENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEIIKKLHKDQTQEIKSYKLKLENLQTLKDAALKLRESIVQEQEKSEILNN
QMQELDRKIQNVDSEINQTESSLKDLRKLQSQIATKSGERKSKFEELQKRYAALNEENED
TDEELNEWKFKFDERIAILESKISKLLREKEDVDEKVRVLTDVNGENTKEIAKLQAASEA
HMSTKNERDLTIQNLLVKHNLGPLTSGPFSDEVAFDLTNRIQSKLKYLDKDLQDKKKSNE
VELKATFEQYMVANDRCKDIEAQKEAKGDMKLATLKRIQEKEIERDSFEVQISATDVTGI
DDRERKLQIEVERKASQLAAKDFSATIRKKQGEVFALEQEIKDLNYQRESMSADSHDRVV
LSLKKAELENHKKKHKRIVDEHKEGIRGVLKGMKPPHKDLKNELIQVQSSLQKEYDNLDK
KADEARNEVTMLKIKIEEVNHNLSKFHKDTESRKRFVESKLLSLDKHSGGVDSYLQTLEI
AKDKRDVQKSKYNIADGMRQMFDPFEKVARAHHICPCCERPFSANEEDDFVKKQRVKATS
SAEHMKVLAVDSSNADFHFQQLDKLRVVYEEYVKTGKELVPLAEKNLEELKEELDQKNQA
LDDILGVLAQIKAEKDSVDTLIQPVETADRLFQELQALQNQVEDLESKLDVSVQGAKSLE
EIVSQLKILENNRSNLHRDLTILREDQLFMTQDLSTHQLRWNSVREEKIKVANLLSNAKR
AEEELNRLAEEKHQVDLELKLLVEDLGPLVKEKNKLLEDYNNSEVRLNHDYELCANNHRK
YQLEVETLLNMNSTIKEYDNLKRGEKLKELLEKQNLSEFELQRCGTRRNELLTELEKCRD
LTRNQAELRRNIEENLEYRKMKAQVDELTREIESLEDSVLKIGGLSKVEAQLLKLSQGRE
TLLTELNRHKGTLSVYKSNIDRNKVDLKHAQYKDIDKRHFDQLILLKTSEMANKDLDRYY
KALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSDGAGTRSYSYKVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRITKDDYQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgtcgataagatgctgataaagggtattcggagttttgaccccgaaaacaag
aatgttattactttcttcaagcccttgactctcatcgtcgggtccaatggcgctggcaaa
acaacaataattgagtgcttgaaggtagcttgcaccggtgaattgcctccaaatgcacgt
tccggtcacagctttattcacgacccaaaagtggcaggagagacagagacgaagggccag
ataaagcttaggtttaaaactgctgcaaggaaggatgttgtctgcataaggtcatttcaa
ctgactcagaaggctactaagatggagtacaaggcgattgagtcggtcctccaaaccatt
aatcctcagactggagagaaagtttgcctaagctatcgatgtgctgatatggatcgagag
atccctgcgcttatgggggtgtccaaggccataattgagaatgttatatttgttcatcaa
gatgaggcaaactggccattgcaagatccatcaacactgaaaaagaagtttgatgatatc
ttttctgcaactaggtacacaaaggccttagagataattaaaaaacttcacaaggatcaa
actcaggagataaagtcatacaagctgaaactggagaatctacagactctgaaagatgcc
gctcttaagcttcgggaaagcattgtgcaagaacaagaaaaatcggaaatattgaataat
caaatgcaggagcttgatagaaaaattcaaaatgtggacagtgaaattaaccagactgaa
tcatcattgaaggatctaagaaaattacaaagtcagatagctacaaagtcaggggaaaga
aaatccaaattcgaagaacttcagaagcgttatgcagctctgaatgaggaaaacgaagac
actgatgaagaactgaatgagtggaaattcaagtttgatgaaaggattgcaattttggaa
tccaaaattagcaagttgttgagggaaaaggaagacgtagatgagaaagttcgagttctt
accgatgtcaatggagaaaatacaaaggaaattgccaagcttcaagctgccagtgaagct
catatgtctacgaagaatgaaagagacttgaccatccaaaacctattggtcaagcataat
ttgggtcctctgacgagtggacctttcagtgatgaggttgcttttgacctgacaaatcga
attcaatcaaagttgaagtatttggacaaggacttgcaagataagaagaaatccaacgaa
gtagaactcaaggcaacatttgaacaatacatggttgcaaatgaccgttgcaaagacata
gaggcccaaaaggaggctaaaggggacatgaagcttgccactttgaaacgcattcaagag
aaggagattgaacgtgactcttttgaagttcagatttcggccactgatgtgactggaatt
gatgacagagaacggaaattgcaaatcgaagtcgaaaggaaagccagccaacttgctgcc
aaagatttcagcgcaactatacggaaaaaacaaggtgaagtatttgccttggagcaagaa
attaaggatcttaactatcaaagagagtccatgagtgctgattcccatgacagagttgta
ctttctttaaaaaaggcagaattggagaatcacaaaaagaaacacaaaagaatagttgat
gaacataaagagggaattagaggggtgttgaaaggaatgaagccgcctcacaaggatttg
aaaaatgaattgattcaggttcagagttctctccaaaaagaatatgataacttggataaa
aaagctgatgaagcaaggaatgaggtgactatgctgaagataaaaatagaagaagtcaac
cataatctgtccaaattccacaaagatacggaatcaagaaagagatttgtcgaatctaaa
cttctgtccttggacaaacattctggtggtgttgattcttatcttcaaaccttagaaatt
gccaaagacaagagagatgtccagaaaagtaaatataacatcgccgatggaatgcgacaa
atgtttgatccatttgaaaaagttgctcgtgctcatcacatttgcccctgttgcgagagg
cccttttctgcaaatgaggaagatgattttgttaaaaagcaaagagtgaaagcgacaagt
tctgctgagcatatgaaagtattggctgtggattcttcaaatgctgattttcatttccag
cagttagacaaacttcgagtggtctacgaagaatatgtcaaaaccggcaaggaattagtt
cctcttgcagagaagaaccttgaggaattaaaggaagaattggatcaaaagaatcaagct
cttgatgacatactgggtgttttagctcaaataaaggctgaaaaagattcagttgacacc
ttgatacagccagttgaaactgctgataggctattccaggaattacaagctttgcagaat
caagtggaagatttggaaagcaaacttgatgtaagtgttcaaggtgccaaatccttggaa
gagattgtgtcacagctgaaaatattggaaaataacaggagcaacttgcatcgtgatctt
acgattttaagagaggatcagttgttcatgacacaggatttgtctactcatcagttaagg
tggaatagtgtaagagaagaaaaaattaaggttgccaatctattgtccaatgctaaaaga
gccgaggaggagttaaatcgtcttgcagaggaaaaacatcaagttgatcttgagttgaag
cttttggtggaggatctcggtcctctggtaaaggagaaaaataaacttctcgaggactac
aataactcggaagtcaggcttaatcatgattatgaattgtgcgcaaacaatcacagaaag
tatcaactggaagttgaaacccttctcaacatgaattctactatcaaagaatatgataac
ttgaaaaggggagagaagttgaaagaactgctagaaaagcagaatttatcagaatttgaa
ctacaaagatgtgggacccgaaggaacgaactattgacagaactggaaaagtgcagagat
ttgactcgcaatcaagcagaactaagacgcaatatagaggaaaacttagaatacagaaaa
atgaaggctcaggtggacgagcttactcgggagattgaatcactcgaagatagtgtgctg
aagattggaggtctttccaaagttgaagctcagcttctaaagctctcgcaaggaagagag
acccttcttaccgagttaaataggcataaaggcaccttatctgtatacaagagcaacatt
gaccggaacaaagttgatcttaaacatgcccaatacaaagatattgataagaggcatttt
gatcaactaattctgcttaagacatctgagatggcaaataaggacctagatcgatattat
aaagcacttgacaaagcactcatgcgcttccacagtatgaaaatggaggagataaataag
attatacgggaattatggcagcagacctacaggggacaggatatagattatataagcatt
cattcagattctgacggtgctggtactcgatcttacagctataaggtcgtcatgcaaact
ggtgatgccgagttagaaatgcgaggaagatgtagcgctggtcaaaaggtccttgcttcg
ctcatcatcagattggcactagctgaaactttttgcctcaattgtggaatactggcgctt
gatgaaccaactaccaatttggatggccctaattctgagtctctcgctgcggctctcctt
agaataatggaggacaggaaaggccaagagaattttcaacttattgtcattacacacgat
gagcgcttcgctcaacttattggccaacgacaacatgctgaaaagtactaccgtatcacc
aaggatgactatcagcatagcataattgaatcacaagagatatttgattga
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