Paenibacillus taichungensis: ACJYJG_11910
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Entry
ACJYJG_11910 CDS
T11411
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ptac Paenibacillus taichungensis
Pathway
ptac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJYJG_11910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptac03019
]
ACJYJG_11910
Messenger RNA biogenesis [BR:
ptac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACJYJG_11910
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GFIT
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NCBI-ProteinID:
XLM67723
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Position
2543708..2545387
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AA seq
559 aa
AA seq
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MSKKNNNDKLMIFALGGVGEIGKNMYVIQYANDIVVVDAGLKFPEEDMLGIDIVIPDISY
LTENRDKVRGIILTHGHEDHIGGLPYVLKHLNVPVYGTKLTLGLVENKLKEANLLGETKR
ILIDADSEIQLGSVLKATFFATNHSIPDSVGVCVETPEGAVVHTGDFKFDHTPVNGQYAD
LQRMAQIGTNGVLALLSDSTNAEKPGFTPSEKNVGIVLEDIFRKASQRVVVATFASNVHR
IQQVINAAEVTGRKVAVIGRSMVNVVGIASELGYLEIPDGMIIEPEEVGKMAADRVVILC
TGSQGEPMSALTRMARSTHRKVDILPGDTVIIAATPVPGNEKYVGRTIDELFRLGANVHY
SGANSGVHVSGHGSQEELKLMLNLMKPKYFLPIHGEFRMQRRHAVLAESVGIDPDNIFIT
DIGEVVEIQGGAARKAGKVTAGNVLIDGLGVGDVGNIVLRDRKLLSQDGILVVVVTLSKQ
DGKIVSGPDIISRGFVYVRESEGLLDEANRIVSSTLQKLMSENVNEWASLKTNVKDALGR
FLYEQTRRRPMILPIIMEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaagaaaaataacaacgataaactgatgatttttgctttgggcggcgtaggcgag
attggtaaaaatatgtacgtcatccaatacgctaacgacattgtagtcgtagatgctggt
cttaaattcccggaagaagatatgcttggaatcgacattgtcattcctgacatctcatat
ctaactgaaaaccgtgacaaagtaagagggattattttgactcacggacatgaagatcat
attggtggtctgccatatgttctgaaacacttgaatgttcctgtatacggaacaaagctt
actctcggacttgttgagaacaagctgaaagaagccaatttgctgggtgaaacaaaacgc
attctgattgatgcggattccgagattcaactcggctctgtattgaaagcaacgttcttc
gctactaaccatagtattccggattccgtcggcgtatgtgtcgaaacaccggaaggcgct
gttgttcatacaggtgacttcaaatttgatcacactccagtcaatggtcaatatgcagat
ctccagcgtatggcacagatcggaaccaatggtgtacttgccctcttgtccgatagtacc
aacgcagagaaacctggatttacaccttcggagaaaaatgtgggtatcgttctggaagat
atcttccgcaaagcaagccaacgtgtcgttgtagcaacatttgcttccaacgtacaccgg
attcaacaggttatcaatgcagctgaagtaactggacgtaaagtcgcagttattggacgc
agtatggtaaatgtggtgggtattgcttctgaactgggttaccttgagattccagatggc
atgatcattgagccggaagaagtaggcaaaatggctgctgaccgtgtagtaattctctgc
acaggtagccaaggcgagccgatgtcagcattgacacgtatggctcgttctactcatcgt
aaagtagatattttgcctggtgatacagtaattattgctgcaactccagttccaggtaat
gagaaatatgtaggccgtacgattgacgaactgttccgtctgggtgccaacgtgcattac
agcggtgcaaacagtggcgtccacgtatccggtcacggtagccaggaagagctgaaactg
atgcttaatctgatgaaaccgaaatatttcttgccgattcacggtgaattccgcatgcag
cgccgccacgcagtactggctgaatctgtaggtattgatccagacaacatcttcattacg
gatatcggtgaagtggttgaaattcaaggcggagcagcacgcaaggcaggtaaagttact
gcaggtaacgtgttgatcgacggcttgggtgtaggcgatgtaggtaacatcgtattgcgt
gaccgtaaattgctgtcacaggatggcattctggttgtcgtggtaacactgagcaaacag
gatggcaaaattgtttccggtccggacatcatctcccgtggatttgtctatgtacgcgaa
tcggaaggactgcttgatgaagccaatcgcatcgtcagcagcacactgcaaaagttgatg
agtgagaacgttaacgaatgggcttcactcaaaacgaatgttaaagatgcactcggacgc
ttcttgtatgagcaaactcgtcgtagaccgatgattttgccaatcattatggaagtttaa
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