Pseudomonas taetrolens: NCTC10697_01300
Help
Entry
NCTC10697_01300 CDS
T08085
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptae
Pseudomonas taetrolens
Pathway
ptae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10697_01300 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptae03019
]
NCTC10697_01300 (deaD)
03009 Ribosome biogenesis [BR:
ptae03009
]
NCTC10697_01300 (deaD)
Enzymes [BR:
ptae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10697_01300 (deaD)
Messenger RNA biogenesis [BR:
ptae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10697_01300 (deaD)
Ribosome biogenesis [BR:
ptae03009
]
Prokaryotic type
rRNA helicases
NCTC10697_01300 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
SQF85549
LinkDB
All DBs
Position
1:1328233..1329903
Genome browser
AA seq
556 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGELLDRLTADIGCSPRAL
AAALLRKATNGQALTLAAIERERPLVPNSAPRERSERSGDRPDRGDRERRAPVPLAEGRA
RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLKD
TRVAGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaatattcttgcagcc
gtcatcgcgactggctacgaagagccttcggctattcagcagcaatcgatcccgatcatc
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gccctgccgatcctgcaccgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttactgttgtagccgtttacggcggcgccccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacttg
cgtcgtgacgaaaaagtattggcaaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaaactgggtttcatggacgacctcgaagttatcttcaaggccttgccaccgacc
cgtcagaccgtattgttctcggcaaccttgccgcagtcgatccgtgccattgctgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagttgaagatttcgacgcgctgatcatgtttgtgcgcaccaagcaagcgaccctggat
ctggccagcgcccttgaagccaaaggctataaagccgctgcgctgaacggtgacattgct
cagaaccagcgtgagcgcgttatcgattccctcaaggatggccgtctggacatcgttgta
gcgactgacgtagctgctcgtggtctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtactggccgtgcaggt
cgcgaaggtcgtgcgctgttgctggtaacgccgcgtgagcgccgtatgctgcaagtgatt
gagcgtgtaaccggtcaaaaggttgctgaagtccgcctgccggatgctcaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctggcgccactggttgctgacgctgaatcg
actcatggcgagctgctggatcgtctgactgccgatatcggttgcagcccgcgtgccctg
gccgcagccctgctgcgcaaggcaaccaacggtcaggccctgaccctggctgccatcgag
cgtgagcgtccactggtgcctaacagcgcaccgcgtgagcgttccgagcgttcgggtgac
cgtccggatcgtggtgatcgcgagcgtcgtgctccggttccattggccgaaggccgtgct
cgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggcgct
atcctcaatgagggtggcctggcacgtgaagcaatcggtcgcatccaggtgcgtgacagc
ttcagcctggtagaactgccggaagatggcctggaaaaactgctggccaagttgaaagac
acccgcgttgccggcaagcagctcaagctgcgtcgctatcgcgaagattaa
DBGET
integrated database retrieval system
