Pseudomonas taiwanensis: ICN73_25930
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Entry
ICN73_25930 CDS
T09297
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptai
Pseudomonas taiwanensis
Brite
KEGG Orthology (KO) [BR:
ptai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptai03019
]
ICN73_25930 (hrpA)
Enzymes [BR:
ptai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ICN73_25930 (hrpA)
Messenger RNA biogenesis [BR:
ptai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ICN73_25930 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_25
ABC_tran
T2SSE
ResIII
NACHT
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QOJ91257
UniProt:
A0A7L9GG28
LinkDB
All DBs
Position
complement(5809261..5813166)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPII
EVSGRTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPTDYQKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLEALDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSVPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEAWD
ESVHQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKGEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAALAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgattgccgac
cgccatcgcctgcgccggcaactgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggagaaggtccaggcctcctgcgctcaggtcaccgcgcgtcagcagagc
gtgccgaccgtacgctacgacgacaacctgcccatcgccgccaagcgtgacgaaatcaag
aaggccctggccgaaaaccaggtgttggtgatcgccggcgagaccggctctggcaagacg
acccagttgccgaaaatctgcctggagcttggccgtggcagccatgggttgatcgcccat
acccagccacgcaggatcgcagcgcgtagcgtggccgcgcgagtcgccgaagagctgggc
acgcccttgggcgcgctggtcggctaccaggtgcgtttcgaagaccagagcgattccaat
accttggtcaagctgatgaccgacggcatcctcctggccgaaacccagcacgaccgcttc
cttgaacgctacgacacgatcatcgtcgacgaagcgcacgagcgcagcctgaacatcgac
ttcctgcttggctacctgaaaacgttgctgcatcgtcgaccggacctgaagctgatcatc
acctcggccaccatcgacctggagcgcttctccaggcacttcgacggtgcgccgatcatc
gaggtgtccgggcgcaccttcccggtggacacctggtaccgcccgctgaccagcgaacag
gacgaagagggcaaccagatcgaggatgacctcaccgtcgatcaggccatccttgccacc
ctcgacgagctggcgcagcacgagcgtagcgagggcaaggggccgggcgatgtgctgatc
ttcctgccgggcgagcgagaaatccgtgatgccgccgagatcttgcgcaaggcgcaactg
cgccataccgagattttgccgctgtacgcgcgcctgtcgccggccgagcagcagcgtatc
ttccaaccgcacaccgggcgccgcgtggtgctggccaccaacgtcgccgaaacctcgctg
accgtgcctggcatccgctatgtgatcgacaccggtaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgcctgccgatcgaggcggtgtcacaggccagtgccaaccag
cgtaaaggccgttgcggccgggtcgagccgggcatttgcgtgcgtctctacagcgaagag
gacttcaacagccggccagcgtttaccgacccggagattctgcgcaccaacctggcggcg
gtgatcctgcagatgttgcacctgcgcctgggcgcaatcgatgctttcccgttcatcgag
ccgccggatggcaaagccatcagcgacggcttcaacctgttgcaggagctttcggcggtc
aaccgcgagaaccagctgacgccaattggccgccagctggcgcgcttgccgatcgacccg
cggctgggccgcatgctgcttgaaggcgcgcgcctgggcagcctgcaggaagtgctgatt
gtcaccagtgcgctgtcggtgcaggacccgcgtgaacgccctccagaacgccagcaggcc
gccgaccaggcgcacgcacagtggaaggacgtggactcggacttcgctgcgctggtcaac
ctgtggcgcggcttcgaggaacaacgccaggcgctgactgccaacccgctgcgcaactgg
tgccgcaagcagttcctgaactacttgcggctgcgcgagtggcgcgatgctcatcgtcag
ttggcgctgatttgccgtgacctgcagctgacggtgaacaaggaaccgaccgattaccag
aagatgcacaaggcaatcctcagcgggctgctcagccagattggccagaagaccgaagag
ggcgactaccagggcgcccgccagcggcgcttctgggtgcatccatcgtcgggcctggga
cgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgagccgctggccggccacctgatcaag
aaaaaccatttcgagccgcactgggagaagaagcgcgggcaggtggtggcctacgagcag
atcacgctctacgggctgatcctggtcggccgtcggccggtgcactacggcccgatcgac
ccggcgacctcgcgcgagctgttcatccgtgaaggcctggtgggtggcgaaatccagtcg
cgggccaagtgcctggcggccaacaaacgcctgcttgaagcgctggacgagctggaagcc
aaggctcgccggcgtgacattctggctgacgaagaaacgctgtacgctttctacgaagcg
cgcctgccggcggaaatccaccagaccgcgaccttcgacagttggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaggacgtgctggcccgcgaggccagc
gaagtgaccgccgcacagtaccccgacagtatgcaggtgggcgatttgcgcctgccgctg
agctaccacttcgagcccggccaccctcgcgatggtgtgacggtgcgggtaccggcgccg
ctgttgccgagcgtgccgggcgagcgcctggagtggctggtgccgggcctgctggaggcc
aagtgcgtggcgctggtgcgcaacctgcccaaggccctgcgcaagaactttgtcccggtg
cctgacttcgtcaaggcttcgctggcgcgcatgaccttcggccaaggggcgctgccacag
gccctgggccaggaactgctgcgcatgaccggggcacgtgtgtcggacgaggcctgggac
gagtcggtccaccaggtcgaaggccacctgcgcatgaacatcgaagtggtcgatggccag
ggcaagttccttggcgaaggccgcgacctggcggaactgaccgcgcgctttgctgccgcc
agccaggctgccctggccgtgccgcgtgacgccaagggtgagcagccggtgcaggccaaa
gccttcagcgaagtgaagcagaccgcccagcagaagatcgccggcctgtcgatgaccgtg
tacccggcgctggtggaagacaacggcactgtgcgtgaagggcgcttctcgacccaggcc
gaagccgagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgag
ccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatggggcgggtcgaggcgctggtcgaagacattctgctggccagcctggacagttgc
atcctggaaggcgaacaaccgttgccacgtgatggcgcggccttggccgcgctggctgaa
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcaaggcagaccctggaagtg
ctgaagctgtggcatgggctgcagaagcgcttcaagggcaagatcgacctgagccaagcg
gtggcgctgaacgacatcaagcagcagctgggcaacctggtgtacccgggcttcgtgcgc
gaaacgcctggggtgtggttcaaggagttgccgcgttacctcaaggcggttgagttgcgc
ctcgagaaactcggctcgcaagtacagaaggaccgggtgtggagcggcgagctggccaat
ttgtgggcgcagtacaaggcccgtgccgacaagcatgcccaggaaggcaagcgcgatgag
caactgactgtgtaccgttggtggctggaagaatatcgcgtgtcgctgtttgcccagcag
ttggggaccaaggtgccgatttctgacaagcgattgagcaaacaatggagtcaggtggaa
ggctaa
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