Parvicella tangerina: CRYO30217_00963
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Entry
CRYO30217_00963 CDS
T08372
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ptan
Parvicella tangerina
Pathway
ptan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRYO30217_00963 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptan03021
]
CRYO30217_00963 (rho)
03019 Messenger RNA biogenesis [BR:
ptan03019
]
CRYO30217_00963 (rho)
Transcription machinery [BR:
ptan03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CRYO30217_00963 (rho)
Messenger RNA biogenesis [BR:
ptan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CRYO30217_00963 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
Stealth_CR1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAG5079513
UniProt:
A0A916JKT9
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All DBs
Position
1:1103948..1105645
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AA seq
565 aa
AA seq
DB search
MYDIKQLSSLKLAELKEVAQKQGLTKYERLKKQDLIYKILDEQAEVLAKKSDAGDNKQSK
RPRKKTNPPANQQNEKKAPAKQENSSKDGGRSRNPRNNNQNKDQEGGDLFSQNKSDDKPE
SNQEKRNPRSNKSDNKNSNNNNNNNNNNGNNNNNNNRQNNNNNNNRSNRKDNNSGGRHRK
QEKKDPALEHGYNFDGMVFNEGVLELMPEGYGFLRSSDYNYLNSPDDVYVSQSQVKMYGL
KTGDTVKAMIRPPREGERYFPLIEVEQVNGRDPEWIRDRVPFKYLTPLFPDERIKLTGHD
NESMSTRIMDLFSPIGKGQRGMIVAQPKTGKTVLLKDVANAIAANHPEIYLIVLLIDERP
EEVTDMKRSVKAEVVASTFDEPADRHVKVANIVLEKAKRMTESGHDVCILLDSITRLARA
YNTVMPASGKVLTGGVDANALQRPKRFFGAARKIENGGSLTILATALTDTGSKMDEVIFE
EFKGTGNMELQLDRKIANRRIFPAIDILASGTRREDLLMGKEELQRVWLLRKYLADMNPI
EAMEFLKDRLAGTSSNEEFLVSMNG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattaagcaattaagcagcctgaagttggctgagttgaaggaggttgcccag
aaacaagggttaacgaagtatgagaggctgaaaaaacaagacttgatctataagatttta
gacgagcaggctgaggttttagcaaaaaaatcagatgctggcgataacaaacagagcaag
aggccacgaaaaaagaccaaccctcctgctaatcaacaaaatgaaaagaaggctcctgcc
aagcaagagaattcttctaaagatggaggaagatcccgaaaccctagaaataataaccag
aacaaggatcaagaaggaggagatcttttcagtcagaataagtcggacgacaagcctgaa
tcaaatcaggaaaaaaggaatccaagatccaacaagtcggataataaaaactccaacaac
aacaacaataataataataataacggtaataacaataacaacaataaccgtcagaacaat
aataacaacaataacagatccaatcgtaaagacaataacagcggaggacgtcatagaaag
caagaaaagaaggaccctgcgcttgagcatggttacaactttgatggaatggtcttcaat
gaaggggtgctggagttaatgcctgaaggttatgggtttttaagatcatcagattataac
tacctcaactctcctgatgatgtttatgtatctcagtcgcaagtgaaaatgtatgggctt
aaaactggagatacggttaaggcaatgatccgtccaccaagagaaggtgagcgatatttt
ccgctgatcgaagtagagcaagttaatggtagagaccctgaatggatcagagatagagtg
ccgtttaaatatcttactccactttttcctgatgaaagaattaagttaacaggacatgat
aatgagtcaatgagtacgcgtatcatggatctattctcacctatcgggaaaggacaacgt
ggaatgatcgtggctcaaccgaaaacaggtaaaacagtgttgttgaaagatgttgcaaat
gccatcgctgcgaatcacccggagatttatctgattgttttattgatcgatgagcgacca
gaggaggtgaccgatatgaaacgaagtgttaaggcagaagttgtggcttcaacatttgat
gagcctgctgatcgacacgtaaaagtggcaaatattgttctcgagaaggcaaaaagaatg
acagaaagtggtcacgatgtttgtatccttctggatagtattacgcgactggcaagagct
tacaatacggttatgcctgcgtcaggtaaagtacttacaggaggtgtggatgcaaatgca
cttcaacgaccaaaacgtttctttggtgctgcaagaaaaatagagaatggaggttcttta
acgatccttgcaacagcgctaacggataccggctctaaaatggatgaggtcatctttgaa
gagtttaaaggtacgggtaacatggaattgcaattggatagaaagatcgccaatagaaga
atattcccggcaattgatatactggcatctggtacaagacgggaagatctattgatgggg
aaagaagagttacagagagtatggttactaagaaagtacctcgcagatatgaacccgatc
gaagcaatggagttcttgaaagatagactagctggaacgtctagtaatgaggaattcctc
gtgtctatgaatggataa
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