Parvicella tangerina: CRYO30217_02931
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Entry
CRYO30217_02931 CDS
T08372
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptan
Parvicella tangerina
Pathway
ptan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRYO30217_02931 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptan03019
]
CRYO30217_02931 (rnr)
03016 Transfer RNA biogenesis [BR:
ptan03016
]
CRYO30217_02931 (rnr)
Enzymes [BR:
ptan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CRYO30217_02931 (rnr)
Messenger RNA biogenesis [BR:
ptan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CRYO30217_02931 (rnr)
Transfer RNA biogenesis [BR:
ptan03016
]
Prokaryotic type
tRNA degradation factors
CRYO30217_02931 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
CAG5085915
UniProt:
A0A916NTI3
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All DBs
Position
1:complement(3257000..3259162)
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AA seq
720 aa
AA seq
DB search
MAKKKKKPQSKLKYKFTKKLVHLFESHPHKNFSEKEIIQIMGVKSTSDRKLIHDVLIELT
TFNIVKAVQRGVYRIAQGSERHNAENVVEGTIDFNQRGAAYLIVDGMEDDIFIHSNNTGK
AFHQDKVRVELFKRQGKIEGKVIDVVERKRTEFVGTVDVGKSTVFVRPEESRMPVDFFIE
KGHLKNAKHGDKVIVKFLSWPGGSKSPLGGVIERLGKPGNMDVDMNVILAENGFPTHFPR
AVELEADAIQEPNYNEEAKKRRDFRKTLTFTIDPIDAKDFDDALSFQELKNGNYEIGIHI
ADVSHYVTPGSKLDLEAYSRGNSVYLVDRVIPMLPEVLSNKLCSLRPKEEKLTFSAVFEI
TPDAKVVNEWFGKTVIYSDHRFTYEQAQEIIEGQAENKEFGDVILTMDKVAKILRKKRLQ
AGALNVESQEVRFELDEKGNPVGLKIKVSKDANKLIEEFMLLANRKVASYIGEPKKGKKV
IPFVYRTHDEPDEAKISDLKGFLAEFGYSIPQVKNKPISYGLNQVMEKAKEKDELHIIGP
LVIRSMSKAVYETDNIGHYGLAFDYYTHFTSPIRRYADLLVHRILFEQLNGRTYKDSNML
DDWCKHISGTEKSATEAERESIKYMQVKFMEDKVGRTYSGKVTGVTDWGIFVELDETKCE
GLLHINNLPGRYVLDTKIKHLVSKEGHENYHLGMAVEVVVKNVDLVKKQMDLILPDDLMF
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaagaaaaagaaacctcagtctaaactgaagtacaaattcaccaagaaattg
gttcacctttttgaatcgcaccctcacaaaaattttagtgaaaaggagatcatccagata
atgggagtcaagagcacatcagaccgaaaacttattcatgatgtgcttatcgagttgacg
actttcaatatcgtaaaagcggttcaaaggggagtatatcgaatagcacaaggaagtgaa
aggcataatgctgaaaatgtagtagaaggtacaatagattttaatcaacgtggagcggca
tatttaatcgttgatggaatggaggacgatatttttattcactcaaacaacactggaaag
gcttttcatcaagataaggttcgcgttgagttattcaaaagacaaggcaagatcgaaggg
aaggtgattgatgttgttgaacgaaaacgtacggaatttgtgggaaccgttgatgttgga
aaatccacagtttttgtacgtccagaggagtctagaatgcctgttgacttttttattgaa
aaaggacatctgaagaacgccaaacacggggataaggtcattgtgaagttcttaagctgg
ccaggaggaagtaaaagtcctttgggaggtgtgatagaaaggctagggaaaccaggaaat
atggatgtggatatgaatgttattcttgcggaaaatggctttcctactcatttcccaaga
gcagtggagcttgaagcagatgctattcaggaacccaactataatgaagaagccaaaaag
agaagagactttagaaaaacactaactttcaccattgatcctattgatgcgaaagatttt
gatgacgcgttatcttttcaagagttaaagaacggaaattatgaaataggtattcacatt
gcggatgtgtcacattacgtaacacctggctcaaaattggatcttgaggcctacagtaga
ggaaattcagtttatttggttgatcgcgtaattcctatgcttcctgaggtgttgagcaat
aagttgtgcagtctccgacccaaggaggagaaactaactttctcagcagtgttcgaaatc
actcctgatgcaaaagtggtcaacgaatggtttggtaaaacagttatttactctgatcac
cggtttacgtatgagcaagcgcaggaaatcattgaaggacaggctgagaataaagaattc
ggagatgtcatccttaccatggataaggtcgccaagatattgcgaaaaaaacgtttgcaa
gctggtgcactgaacgtagagagtcaggaggtgcgttttgaattagacgagaaagggaat
cccgttggactgaaaattaaagtgtctaaggatgcgaataagctgatcgaggagtttatg
ctcttagcaaacagaaaggtagcatcatatattggagaaccgaaaaaagggaaaaaagtg
attccttttgtgtatcgaacgcatgacgaacctgatgaagcaaaaatctccgatcttaaa
ggtttcctggctgagttcggttattctattccgcaagtcaaaaacaaacctatttcttat
gggttgaatcaggtgatggaaaaggctaaggaaaaagacgaactccacattattggtccg
ctagttattcgttccatgtctaaagcggtttatgaaacggataacatagggcattacggt
ttagcctttgattattatacccattttacttctcccataagaaggtatgctgatctattg
gtgcatagaatcttgtttgagcaactgaatggacgtacctacaaagacagcaatatgttg
gatgattggtgcaaacatatttctgggactgaaaaaagtgctaccgaagcggaacgcgag
tcgatcaagtatatgcaggtcaaattcatggaggataaagtgggaagaacttattcaggt
aaagtcactggtgtgactgattggggcatttttgtggagttggatgagacaaaatgtgaa
ggattgctgcacattaataatttgcccggtcgttacgtgctagacacaaaaatcaaacat
ttggtctctaaagaaggtcatgaaaattaccacctgggaatggctgttgaagtagttgta
aaaaatgtggatcttgtgaagaagcaaatggacttgattcttccagatgatttgatgttt
tag
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