Phyllopteryx taeniolatus (common seadragon): 133476747
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Entry
133476747 CDS
T09737
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptao
Phyllopteryx taeniolatus (common seadragon)
Pathway
ptao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133476747 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptao03019
]
133476747 (parn)
Enzymes [BR:
ptao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133476747 (parn)
Messenger RNA biogenesis [BR:
ptao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133476747 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_NFXL1
RRM_1
Motif
Other DBs
NCBI-GeneID:
133476747
NCBI-ProteinID:
XP_061626541
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All DBs
Position
4:21563608..21579267
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AA seq
677 aa
AA seq
DB search
MEVTRKSFKDCLNLVYAAIEEADFLAIDGEFSGISDGPSVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDEKDSKYVTKTFNFYIFPKPFNRTSPDIKFVCQSSSIDFLASQG
FDFNKVFCHGIPYLNHEEEAQLREQTEERRSQQANGVGTPTFVSPSCSKGPAHVPDEHKD
FIKKVVEKVEALFSSTEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETMEIDKKERFIQ
VSKVDEEERKKREQQKLEKEQGQLNDAVGFSRVVHAISKSGKLVVGHNMLLDVMHTIHQF
YCPLPEELQDFKEVTMCVFPRLLDTKLMASTQPFKDLINNTSLAELEKQLNESPFKTPEI
EAAEGFPSYNTAKEQLHEAGYDAYITGRCFISMANFLGSFLTPPKAYVSARSKLIEPFYN
KLFLMRIIDIPYLNITGPDLQPKRDNVLYVTFPKEWKTSDLYQLFSAFGNIQVSWMDDKS
AFVSLSQTDQVQIAMNTSRYAESYRIRTYAEYIQGKQQEKEKLAPAPKSWTEDCWVKPHY
AASAASGGFGYPRALRKRGGSPIQAEEGSAEGADGWSHYSYSDGTGSKKMKTDEVVESKT
SEGWLKTTDACESSGSSPVSEEDGPGGADSAKDAEGTLSWQRASAAAAVPPARKTQKNKK
KSDGAGVSSLFEVPEVW
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgcaaatcttttaaagactgtttaaacttggtgtacgccgcgatagag
gaggcggactttctcgccatcgatggggagttttcagggatcagcgacggacccagcgtc
agtgcactcaccaacgggctggacacgccggaggaacgctacactaagcttaaaaagcat
tccatggattttctactcttccaattcgggctgtgtaccttcaaatatgacgagaaagat
tcaaagtacgtcacaaagacttttaacttttatatatttcccaaacctttcaaccggacg
tcgcctgacatcaaatttgtctgccaaagttccagtattgacttcctggccagtcaaggc
tttgacttcaacaaggtgttctgtcacggaatcccctacctgaaccatgaggaggaggcc
cagctgagggagcagaccgaggagaggcgaagccagcaggccaacggtgtcggtacgccg
accttcgtctcgccgtcctgctccaagggccccgcccacgtgcccgacgagcacaaggac
ttcatcaaaaaagtggtggagaaggtggaggccctgttctcgagcacggagaagaccctc
gacctggagccgtgcaccgggttccagaggaagttgatataccagacactaaactggaag
tttccaaaggggctgcatgtggaaaccatggaaatagacaagaaggagcgctttatccag
gtcagtaaggtggatgaggaggagaggaagaagagggagcagcagaaactagagaaggag
caggggcagctaaatgatgccgtgggcttctcccgggtcgtccacgctatctccaagtct
ggtaaactagtggtggggcacaacatgctgctggacgtgatgcacactatccaccagttc
tactgtcctctgcctgaggagcttcaagattttaaagaggtcaccatgtgtgttttcccg
aggcttttggatacaaaattgatggcgtccactcagccctttaaggatctgattaacaat
acgtctctggccgagctggagaagcagctgaacgaaagccccttcaagactcctgaaatt
gaggcggccgaaggctttcccagctacaacacggccaaggagcagctgcacgaggccggc
tacgacgcctacatcaccggacgctgcttcatctccatggccaacttcctgggctccttc
ctgacgccgcccaaagcgtacgtgtcggctcgctccaaactcatcgagcctttctacaac
aaacttttcctgatgaggataatagacatcccctacctcaatatcacaggaccggacttg
caaccgaagagagacaacgtcctctacgtcaccttccccaaagaatggaagaccagtgac
ctctaccagctctttagtgccttcggaaacatccaggtctcgtggatggatgataagtcc
gccttcgtgtccctcagccaaacggaccaggtgcagatagccatgaacaccagccgctat
gccgagagctacaggatccggacgtacgcagagtacatccagggaaagcagcaggagaag
gagaaactggctcccgctcccaagtcctggacggaagactgttgggtgaagcctcactac
gcagcctctgccgcttctggcgggttcggataccccagggctttgaggaagcgcggtgga
agtcccatccaggcggaggagggaagcgcggagggcgccgacggctggagtcactactcg
tactctgacggcacaggaagcaagaagatgaaaaccgacgaagttgtggagagcaagacg
tcagagggatggctaaagaccacggacgcttgcgagtcgtccgggtcgagtcccgtctcc
gaggaggacggtcccggaggtgccgattcggcaaaggacgccgagggtacgctcagctgg
cagcgggcctctgccgctgcagccgtgccgcccgcgcgaaaaactcaaaagaacaagaag
aaatctgacggtgctggagtgtcgtcgctgtttgaggttcccgaggtgtggtag
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