Phyllopteryx taeniolatus (common seadragon): 133477019
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Entry
133477019 CDS
T09737
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ptao
Phyllopteryx taeniolatus (common seadragon)
Pathway
ptao03030
DNA replication
ptao03410
Base excision repair
ptao03420
Nucleotide excision repair
ptao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133477019 (rfc1)
03410 Base excision repair
133477019 (rfc1)
03420 Nucleotide excision repair
133477019 (rfc1)
03430 Mismatch repair
133477019 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptao03032
]
133477019 (rfc1)
03400 DNA repair and recombination proteins [BR:
ptao03400
]
133477019 (rfc1)
DNA replication proteins [BR:
ptao03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133477019 (rfc1)
DNA repair and recombination proteins [BR:
ptao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133477019 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
PTCB-BRCT
AAA_22
AAA_30
AAA_5
RuvB_N
Rad17
AAA_16
AAA_17
AAA_14
AAA_18
AAA_33
AAA_19
nSTAND3
RNA_helicase
BRCT_2
AAA_7
NTPase_1
Motif
Other DBs
NCBI-GeneID:
133477019
NCBI-ProteinID:
XP_061627211
LinkDB
All DBs
Position
4:27896300..27914232
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRRFFAPSAHKATTNGNIGSTKRNPLSSDEEVKKKRESKMKKQETEVKQTRDRKKWKK
RAVIDSDSDSEERDRKSKKSPRKKQKLSKAARSLKNEPVHCVLETDSDSDNFESLKKASI
NKQNGTSQKSRSSPSVKEAAKSLIKSSSVHLQIGAKCPSTPVTPKTAPPPQAKQTPTSVF
DYFGNGSIQRSDKKLVASTKRKTPVQDTDDVSDEQIARHLQMVEDAELEKQIHEDEDFAQ
TLAMLDAEPQAKKVRKGSDKKEDLEAFPRKRTALSHSKANRNDSTSEDVRGPSPKKNPAL
VKPSSKLGMMKKRDEEQEDVTPRQAQTNLKVSPKKEPITVSCREKLQASKIGTTLKTSPT
EAASTRTDEAEKKKSNTSAYRNYLNRDGPRALGSKEIPTGADNCLEGCAFVLTGVLESLE
RDDTKSLIERHGGKVTGNVSKKTTYLVRGRDSGVSKLEKAESFGTKILSEDDLLELIRTK
PGKKSKYEIAAEAESKASKTRTPPGLVSKIPPKASKMSPSKGNSKSPHTPSPSKTGQKTS
RRAKTTDGGTPPGRGSVRRDLGFSSSASSSAGPHPRTKSVNEEGATLLWVDKYRPCSLKA
VIGQQGDQSCASKLLRWLQNWYKHHSSGASKPPVARFGKFGAGKDDGSGYKAALLSGPPG
VGKTTTAALVCEELGFSYVEMNASCTRSKTNLKEVVAESLNNTSIESFYKGTSQKVSTKH
VLIMDEVDGMAGNEDRGGVQELIGLIKTSKIPIICMCNDRNHQKIRSLANYCFDLRFQRP
RMEQIKSAMMSIAFKEGIKMPPPALNEIILAANQDIRQVIHNLSMWSAKDKVMTYDQCKS
DAAAARKDLKMGPFDVCRKVFAAGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPA
AAGGDAKSHLVLLSKTADAISDGDLVDRRIRSGQNWSLLPTQAIYASVIPGELMKGYMSQ
FPSFPSWLGKHSSAGKHSRIIQELASHMALKTMSGGRAVNLDYLHFLRQALLSPLQKLAA
EGAGRAVRLLDDYQLVREDVDGMMEMASWGGRPDPYSKLDSKVKAAFTRAYNKEVHLTPY
SLQAVKKGRRAGGQESELGAQDAEKDGVASDDEEGMDAMIKQKKTKATKKEKAEDSGKGK
GKAKK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggcggttctttgcgccatcggcacacaaagcgacaactaatggaaacatt
ggaagcacgaagaggaatcctctttcctcagacgaagaggtgaaaaagaagagagagtcc
aagatgaaaaaacaagaaacagaagtgaaacaaacgcgtgaccgaaaaaaatggaaaaaa
cgtgccgtcatagactcagactctgactcagaggagcgagaccggaagtccaagaaatcg
ccaaggaagaaacagaagctgagcaaggccgcacggtcgctcaagaacgagcctgttcac
tgcgtcttggaaacagactcagacagtgacaactttgaatccctgaagaaggcctccata
aacaagcaaaatggcacctcccaaaagagcaggtcgagtccaagtgtgaaagaggctgca
aagtccctcatcaagtcgtcctctgttcacttgcaaattggagccaaatgtcccagcacg
cccgtcacgccaaagacggcgccgccacctcaggccaaacaaacccccacctctgtattt
gactacttcggcaacggaagcatccagcgctcggacaagaagctggtcgccagcacgaaa
cgaaagacccccgtccaggacacagatgatgtgagcgatgagcagattgctagacatctg
caaatggttgaggatgctgagctggagaagcagatccatgaagatgaagactttgcacaa
acacttgccatgctggacgcggaaccacaggcgaagaaggtgcgtaaaggctcggacaaa
aaagaggatcttgaggccttccccaggaagaggactgcactcagccattcaaaggccaac
agaaatgacagcacgtcagaggacgtcagaggtccttcgcccaagaaaaaccctgctcta
gtcaaacccagttccaaactggggatgatgaagaaaagggatgaggaacaagaagacgtg
acccctcgccaagcacagacaaatttgaaagtctcgcccaaaaaggagccaatcacagtt
tcatgccgagaaaagctgcaggcatccaaaataggaactacacttaaaacatctcccact
gaggcagcgagcacaaggactgatgaggcagagaagaagaagagcaacacttcggcttac
cggaattacctcaacagagatggaccacgagcactgggctccaaagaaatccccacgggc
gcagataactgtctggagggttgcgcgtttgtgctgacgggtgttctggagtcactggag
agagacgacaccaaatccctcatcgagcgccacggcggcaaagtgacgggcaacgtcagc
aagaagaccacctacctggtgcggggccgagacagcggcgtctccaagctggagaaggcg
gagagttttggtaccaaaatccttagtgaagatgatctgttggagctgattaggaccaag
ccaggaaagaagtccaagtatgagatcgctgcagaggctgagagcaaagcctcaaagacc
aggactcctccgggcctggtttcaaagatcccccctaaagcttcaaagatgtctccctcc
aaaggcaactccaaatcccctcacacgccgagtccctccaagactggacagaaaaccagc
cgccgtgccaaaaccacagatggcggaaccccacccggaagaggctccgttcgtagggac
ttgggcttttcttcgtccgcctcctcatctgctggcccacacccaagaacgaaatcagta
aatgaggaaggtgccactctgctgtgggtggacaaatatcgcccgtgctcgctgaaggct
gtgatagggcagcaaggggaccagagctgcgccagtaagctgctgcgctggctgcaaaac
tggtacaagcatcacagcagcggcgcctccaaaccaccagttgccagatttggaaagttt
ggggcaggaaaagatgatggatccggatacaaagctgctctgctctccggaccaccgggt
gtggggaagaccactacggcagcgctggtctgcgaggagttgggcttcagctacgtggag
atgaatgcgagttgcacacgcagcaaaaccaacctgaaggaagtggttgcagagtccctt
aacaacaccagcattgagagcttctacaaaggcacttcccagaaagtgagcactaaacac
gtcttgatcatggacgaggtggacggcatggcgggcaacgaggatcgtggcggcgtgcag
gaattgatcggcctcatcaaaacttccaagattcccatcatctgcatgtgcaacgatcgg
aaccaccagaagatcagatcgttggccaattactgctttgatctgcgctttcagaggcca
cggatggagcagatcaagtccgctatgatgtccatcgcgttcaaggaaggaatcaagatg
ccgcctcccgcacttaacgagattatcttggcggccaatcaagacatcagacaggtgatc
cataacctcagcatgtggtcggccaaagacaaggtgatgacctacgaccagtgcaagtct
gacgccgccgccgcccgcaaggacctgaagatggggccctttgacgtctgccggaaggtg
ttcgccgccggcgaggagacggcgcacatgagcctcatcgacaagtccgatctcttcttc
cacgactactcgctagcgcccctctttgtccaggagaattaccttcacgttcggcccgcc
gccgccggcggcgacgccaagtcccacctcgtgctgctcagcaagacggccgacgccatc
agcgacggagacctggtggaccgacgcatccgctctggccagaactggtctttgctgccc
acgcaggccatctacgccagtgtaatcccaggcgaactcatgaaaggttacatgagtcag
ttcccatctttcccgagctggctgggcaaacattcgtcggcgggcaaacattcgcgcatc
atccaggagctggcatcgcacatggctttgaagacgatgagcggcgggcgggcggtcaac
ttggactacctgcacttcctgcggcaggccctgctcagcccgctccagaaactggcggcg
gagggcgccggtcgcgccgtgcggctgctggacgattaccagctggtcagggaggacgtg
gacggcatgatggagatggcctcgtggggcggacggcctgacccctactccaaactggac
tccaaggtgaaagcagcgttcacgcgagcgtacaacaaagaggttcatctgacgccgtac
tccctgcaagccgtcaagaaggggcggcgcgccggcggccaagagtccgaactgggagcg
caggacgccgaaaaggacggcgtggcgtccgacgacgaggaagggatggatgctatgatc
aaacagaagaagaccaaagccaccaagaaggagaaggctgaggattctggcaagggcaag
ggcaaggctaaaaagtga
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