Phyllopteryx taeniolatus (common seadragon): 133480315
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Entry
133480315 CDS
T09737
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptao
Phyllopteryx taeniolatus (common seadragon)
Pathway
ptao03013
Nucleocytoplasmic transport
ptao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133480315
03015 mRNA surveillance pathway
133480315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptao03019
]
133480315
Enzymes [BR:
ptao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133480315
5.6.2.5 RNA 5'-3' helicase
133480315
Messenger RNA biogenesis [BR:
ptao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133480315
mRNA cycle factors
Common to processing body (P body) and stress granule
133480315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
133480315
NCBI-ProteinID:
XP_061634114
LinkDB
All DBs
Position
7:18081288..18102633
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLESQVNG
PDEGLHNGGVEDSVAKASQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKATSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTVGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGNKPGRGGRQRPRGSATQGAGHGLN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcatacgggccaagctcccagaccctcacctttttggacacggaggaa
acggagttactcggagcggacacccagggctccgaatacgacttcaccgacttcaccctc
ccgagccagactcagacccagggccagacccagagccagctggaaagccaggtgaacggt
cccgatgaggggctccataacggcggagtggaagattctgtggctaaagccagtcagtta
ttggcagaactcaatttcgaggaggatgaagaagacgcctactacacgaaggacctgccc
gtgcacgcttgcagctattgtggtattcacgatccagcctgtgtggtttactgcaacacc
agcaagaagtggttctgcaatggacgtggaaatacatctggcagccacatagtaaatcat
ttggtgcgagccaaatgcaaagaggtgacacttcacaaagatggacctttgggagagact
gtgctggagtgttacaactgtgggtgtcgcaacgtcttcctcctgggtttcatccctgcc
aaggctgattctgtagtggtgctgctctgtagacagccttgtgccagccagagtagcctg
aaagacatcaactgggatagctcccagtggcagccgctgatccaagaccgctgttttctc
tcatggctggtgaagatcccgtcggagcaggagcagctgcgtgcccggcagattactgcc
cagcaaatcaacaagctggaggaactctggaaggacaaccccactgccaccttggaggac
ttggagaagcctggtgttgatgaagagccccaacatgtgttgctgcgctatgaggatgcc
taccagtaccaaaacatttttggtcctttggtcaaactggaggctgactacgacaagaag
ctcaaggagtctcagacccaagataatataacagtaaggtgggacttgggactgaataag
aagcggattgcatatttcactctgccgaagaccgattcaggtgatatgcgcttgatgcaa
ggtgatgagatctgcctgcgctacaaaggagacctggctccgctgtggaaagggatcggc
catgtcatcaaagttccagacaactatggggatgaaattgctattgagctgaggagtagt
gttggagcccctgtggaaattcctcataacttccaggtggactttgtgtggaaggctact
tcctttgacaggatgcagagtgctctgaagacctttgctgtggatgaaacctctgtgtca
ggctatatttaccacaagctgctgggtcacgaggtggaagatgttaccatcaagtgtcag
ctccccaagcgcttcactgcccagggcctacctgatctcaatcactcacaggtgtatgct
gtgaagacggtgctacagaggcctctcagtcttatccagggtcctcctggtactggcaag
actgttacctctgccactattgtctatcacctttcacgtcagggcaacggaccagtcctg
gtgtgcgctcccagtaacattgcagtggaccagttaaccgagaagattgacaagactggg
cttaaggtggtcaggctgtgtgctaaaagccgtgaggctattgagtcaccagtgtctttt
ctggcgttgcataaccagatcagcaatatggacagcatgccagaacttcagaaacttcag
cagctaaaggatgagaccggtgagctgtcttctgctgatgagaagcgctacagagccctg
aaacgcaccgctgagagggaactgcttatgaacgcggatgtgatctgctgcacctgtgtt
ggcgcaggagaccctcgcctggccaagatgcagtttcgctccatcctgattgacgaaagc
acccaggccaccgagcctgagtgtatggtgcctgttgttcttggagcaaagcagctcatc
ctggtgggtgaccactgccagcttggtcctgtggtgatgtgtaagaaggcagccaaggca
ggcttgtctcagtcgctgtttgagcgcttggtggttctgggtatccggccaattcgcctt
caggtccagtaccgaatgcatccagctctcagtgccttcccatctaacatcttctatgag
ggctccttgcaaaatggcgtcacggcagctgaccgcatcaagaaaggctttgacttccag
tggccacagccagacaaacccatgttcttttatgtgactcaaggccaggaggaaattgct
agctctggaacctcctacctgaataggaccgaggctgcaaatgtagagaaaatcaccact
aggctgttaaaggcaggtgccaagcctgaccagattgggatcatcaccccatatgagggt
cagcgttcctacctggtccaatatatgcagttcagtggctctcttcacactaagctctat
cagcaagtggaaattgcaagtgtggatgccttccagggcagagagaaagacttcatcatc
ctgtcgtgtgttcgtgccaacgagcaccagggtatcggcttcttgaatgatccacgtcga
cttaatgtggctttgaccagagccaaatatggagtgatcattgtggggaaccccaaggcc
ctttctaagcagcctttgtggaacaacctgctgaacaactacaaggagcagaaggtcctc
gtggagggacccctcaacaacctgagggagagcctcatgcagttcagcaagccacgcaag
ctagtcaacaccatcaatcctggtggacgtttcatgagcactgcgatgtatgatgcccgt
gaagctctcattcctggttcagcctacgaccgcagcaatactgttggtcgcccgtcaaac
atgtatttccaaactcacgaccaaatcgggatgattggggcgggccctggtcacatggct
gcgatgaatctcccaatacccttcaacctggtgatgccccccatgcctccgcccagctac
ttaggccagactaacggccccgctgcaggccgtggagctatgaaggggaataagccagga
cgtggtgggcgccagaggccccgtggctcagcaacccaaggtgccggtcacgggctaaac
agccaagccagccaggatggggcgtcccagtccttctcacaggggccactgactcaaggc
tacatctcaatgagtcagccttcccagatgagccagcctggtctctcccagccagaactg
tcccaggacagttacctgggtgacgagttcaagtcccaaatcgatgtggctttgtctcag
gactcgacttaccagggtgaacgtgcataccagcatggtggggtgaccggcctgtcacag
tactag
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