KEGG   Pseudolabrys taiwanensis: DW352_02920
Entry
DW352_02920       CDS       T10934                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ptaw  Pseudolabrys taiwanensis
Pathway
ptaw03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ptaw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DW352_02920 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptaw03021]
    DW352_02920 (rpoC)
   03400 DNA repair and recombination proteins [BR:ptaw03400]
    DW352_02920 (rpoC)
Enzymes [BR:ptaw01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DW352_02920 (rpoC)
Transcription machinery [BR:ptaw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DW352_02920 (rpoC)
DNA repair and recombination proteins [BR:ptaw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DW352_02920 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: AXK79562
UniProt: A0A345ZRL5
LinkDB
Position
637890..642092
AA seq 1400 aa
MNQEIMNLFSPQAPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTPLKDRQLLSEEEYLKAQDEFGQDSFTA
LIGAEAIREMLKGMDLDRLQVELRAEMGETDSDIKKKKIAKRLKLIEAFIASGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSLMSEGQPGEGKVFGDLATIDHALH
EKAITLHSKIKYRWEGIDENGNTFTRWYDTTPGRVVLGNVLPKNVKAPFDLVNKLMTKRE
ISGMIDAVYRHCGQKETVIFCDRIMALGFYHAFKAGISFGKDDMVVPKKKWDIVEKTREE
AKDFEQQYNDGLITQGEKYNKVVDAWSKSTDKIAEEMMREISATKKDDKGRDLQINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPDGSIIETPIVSNFKEGLTVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITEPDCGTTNGIKVRAIIDAGTVVASLAVRILGRTT
AEDVKDPTSSAVIMPAGTLLQEPEVEKITQAGVQELKIRSVLTCESKVGVCGACYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSFIESNFDGKIQIRGLNV
AKNSDGDVVTMVRNMVVAVVDPDGTERAHHRIPYGARLRIEDGQMIKRGTRIAEWDPYTR
PMLTEVEGTIEFEDMVDGLSMSEQLDESTGIAKRVVIDWRTGSSRNQADLRPAIVIKGAD
GKVLKLARGGEARYLLAVDAVISVDPGSKVKAGDVIARIPTESAKTRDITGGLPRVAELF
EARKPKDAAIIAETSGSVRFGKDYKNKRRLTIEPTDKSEEPREYLIPKGKHIHLQDGDVI
EKGDYIVEGNPAPHDILAIRGVEELASYLTNEIQEVYRLQGVMINDKHIEVIVRQMLQKV
EIDDAGETELLQGEQVDKSELEEVNERAAEEGKKPATGHPVLLGITKASLQTRSFISAAS
FQETTRVLTEAAVNGKADTLDGLKENVIVGRLIPAGTGAMMNQLREVATKRDALILEERE
KDATKTAPAPAEAPALPPAE
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgaaccaagaaattatgaatctcttcagcccgcaggcgccggcgcaggtcttcgaccag
atccggatctcgatcgcgagcccggagaagattctgtcctggtcctacggcgagatcaaa
aagccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggtctgttctgcgcg
cgcatcttcgggcccatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgctcggtggaagtcacgctcagccgcgtgcggcgc
gagcgcatgggccacatcgagctcgcggcgccggtcgcgcacatctggttcctgaagtcg
ctgccgagccgcatcggtctgctgctcgacatgacgctcaaggacctcgagcgcatcctg
tacttcgaatactacgtcgtgcttgagccgggcctcaccccgcttaaggatcgtcagctg
ctgtccgaagaggagtacctcaaggcgcaggacgagttcggccaggattcgttcaccgct
ttgatcggcgcggaagcgatccgcgagatgctcaaggggatggatctcgaccggctgcag
gtcgaactgcgcgccgagatgggcgagaccgacagcgacatcaagaagaagaagatcgcc
aagcggctgaagctgatcgaggccttcatcgcctcgggcaacaagccggagtggatgatt
ctgaccgtggtgccggtgatcccgccggatctgcgtccgctcgttccgctcgacggcggc
cgcttcgccacgtccgatctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgt
ctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtggatgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctcaagctgcatcagtgcggcttgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggctcgacgccaagggcctgtcgacgaccgtgaagcaggccaag
aagctggtggagaaggagaagccggaggtttgggacatcctcgacgaggtgatccgcgaa
cacccggtgcttctgaaccgcgcgccgaccttgcaccgcctcggcatccaggctttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggtcagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactatctctctttgatgagcgag
gggcagccgggcgagggcaaggtgttcggcgatctcgcgacgatcgatcatgcgttgcat
gagaaggcgatcacgctgcactcgaagatcaagtatcgctgggaaggcatcgacgagaac
ggaaacacgttcacgcgctggtacgacacgacccccggtcgcgtcgttctcggcaacgtg
ctgccgaagaacgtcaaggcgccgttcgacctcgtcaacaagctgatgacgaagcgcgaa
atctccgggatgatcgacgcggtgtaccgtcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctaccacgcgttcaaggccggcatttcgttcggc
aaggacgacatggtcgtgccgaagaagaagtgggacatcgtcgagaagacccgcgaggaa
gccaaggacttcgagcagcagtacaacgacggcctgatcacccagggcgagaagtacaac
aaggtggtcgatgcctggtccaagtcgaccgacaagatcgccgaagagatgatgcgcgag
atctcggccaccaagaaggacgacaagggccgcgatctgcagatcaactcgatctacatg
atggctcactcgggcgcgcgcgggtcgccggcccagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccggacggctcgatcatcgagacgccgatcgtgtcgaacttcaag
gaaggcctcaccgttatggagtacttcaactccacgcacggtgcccgtaagggtctggcc
gacaccgccttgaagacggcgaactcgggttacctgacgcgtcgtctcgtcgacgtcgcc
caggactgcatcatcaccgagccggattgcggcacgacgaacggcatcaaggtccgcgcg
atcatcgatgccggcacggtcgtcgcttcgctggccgtgcgcatccttggccgcaccacg
gccgaggacgtgaaggacccgacgtcgagcgcggtcatcatgcccgccggcacgctgctg
caggagccggaggtcgagaagatcacgcaagccggcgtgcaggagctcaagatccgctcg
gtgctgacctgcgaaagcaaagtcggcgtttgcggcgcctgctacggacgcgatcttgcc
cgcggcacgcccgtgaacatgggcgaggctgtcggcgtcatcgcggcgcagtccatcggc
gagccgggcacccagctcaccatgcgtacgttccacatcggcggcgccgctcagatcaac
gagcagtcgttcatcgagtcgaacttcgacggcaagatccagatccgcggtctcaacgtc
gccaagaactcggacggcgacgtggtgacgatggtgcgcaacatggtcgtcgcggtcgtc
gaccccgacggcaccgagcgcgcgcatcaccgcatcccctacggtgcgcgtctgcgcatc
gaggacggccagatgatcaagcgcggcacgcgtatcgccgagtgggatccgtacacccgg
ccgatgctgaccgaggtggaaggcacgatcgagttcgaggacatggtcgacggtctgtcg
atgtccgaacagctcgacgagtcgaccggcatcgccaagcgcgtggtcatcgactggcgt
acgggttcgtcccgtaaccaggccgacctgcgtccggcgatcgtgatcaagggtgcggac
ggcaaggtgctcaagctcgcccgtggcggcgaagcgcgttacctgctcgccgtcgacgcc
gttatctcggtcgacccgggctccaaggtgaaggcgggcgacgtcatcgcgcgtatcccg
accgaaagcgccaagacgcgtgacatcaccggcggtctgccgcgggtggctgagctgttc
gaagcccgcaaaccgaaggacgcggcgatcatcgccgagaccagcggcagcgttcggttc
ggcaaggactacaagaacaagcgccggctcacgatcgagccgaccgacaagagcgaggag
cctcgcgagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcatc
gagaagggcgattatatcgtcgagggcaatcccgccccgcacgacattctcgccatccgc
ggcgtcgaggagctcgcttcgtacctgacgaacgagatccaggaggtctaccggctgcag
ggcgttatgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtc
gagatcgacgacgccggcgaaaccgagctgttgcaaggtgagcaggtcgacaagagcgag
ctcgaggaggtcaacgaacgcgctgcggaagagggcaagaagccggcgacgggtcacccc
gtgctgctcggcatcaccaaggcctcgctgcagacccgctcgttcatctcggcggcctcg
ttccaggagaccacgcgcgtcctcaccgaagccgcggtcaacggcaaggcggacacgctc
gacggcctcaaggagaacgtcatcgtcggccgcctgatcccggccggcaccggcgccatg
atgaaccagctgcgcgaggttgcgaccaagcgcgatgcgctcatcctggaagagcgggag
aaggacgcgaccaagaccgcgcctgcgcccgccgaggctccggcgctgccgccagccgag
taa

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