Parageobacillus toebii NBRC 107807: DER53_01285
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Entry
DER53_01285 CDS
T06505
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptb
Parageobacillus toebii NBRC 107807
Pathway
ptb03030
DNA replication
ptb03430
Mismatch repair
ptb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DER53_01285 (dnaE)
03430 Mismatch repair
DER53_01285 (dnaE)
03440 Homologous recombination
DER53_01285 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptb03032
]
DER53_01285 (dnaE)
03400 DNA repair and recombination proteins [BR:
ptb03400
]
DER53_01285 (dnaE)
Enzymes [BR:
ptb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DER53_01285 (dnaE)
DNA replication proteins [BR:
ptb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DER53_01285 (dnaE)
DNA repair and recombination proteins [BR:
ptb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DER53_01285 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QIQ31674
LinkDB
All DBs
Position
complement(253498..256809)
Genome browser
AA seq
1103 aa
AA seq
DB search
MSFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIR
PIIGMITDIVLEGESTYPLVLLAKNETGYQHLIKISSTIQTKTQEGIPEKWLWHYRGGLI
ALTPGKSGQIETLLAHNEITKAKQVLERYKQIFGDDFYLSVQRGENKQQEPYEQQLIHLS
NETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVIKTGMATDGERYLTSPEEMKKRFSD
LPEAVENSRKIADQCHLHISLDTLKLPKYPVPEKENADHYLRRLCLKGLYERVSSPSDAY
IKRLEYELDVIQQMDFSDYFLIVWDFMNFARKKGIVTGPGRGSAAGSLVAYTLYITDIDP
IQYGLLFERFLNPERVSMPDIDIDFPDDRREEVIQYVANKYGQQYVAQIITFGTFGAKAA
LRDIGKVLQIDSKEMENIIKYVPNKHGITLQEAYHQSFAFRQAVQASSLLKQWIAIAMKV
EGLPRHTSTHAAGVIISSEPLSQIVPLQQGHGELYLTQYPMDVLERLGLLKMDFLGLRTL
TLLEHICRLIQQQTGKTIDVRSIPLDDRKTYELVSKGDTNGIFQLESDGMKQVLKQLKPS
QFEDIVAVNALYRPGPIDYIPSYIKRKHGEENVSYLHPDLAPILAPTYGVLIYQEQIMQI
AANIAGFSLGKADLLRRAVAKKKKEILDQQRNEFVQGCIDQGYDEGFANDVYDMIVRFAN
YGFNRSHAVAYSMLSYQLAYLKAHYPLYFYTALLTSVIGDEEKVSLYIYEARRKQIEILP
PSINQSRYSFSVEHEKIRYSLAAIKHVGIAAVKAIVQERKKGPFADFFDFCVRLFGKGIN
RKTIESLILSGCFDEFGIERASLLASVDVALEHAQLVGPYVEEGLFSDISLKPKYVEAPS
LSLEEKLMYEKELLGVYVSPHPTSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEER
KTRTKTGEEMAFFTVSDESGEMDVVAFPDVYRRYSSVLKKGTVRLLEGKVEVRKGKAQLV
IRKADVPAMEALYVKIRPEHIASGKLFTLKELLQKYHGKTPVFLYYEQEQKMVKLTEEYD
VALTDECIASLKALLGDEHIVVK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtttgttcaccttcacgttcgcagctgttacagcctgttaacaagtccagcgaaa
atcagcgatttggtaaaaaaggcaaaagacctgcaattttctgcactggcattaacagat
gaaaacgtattgtacggagcaattcctttttatatggaatgtaaacgttacggtattcgg
ccgattattgggatgatcacagacattgtgctggagggggaaagcacatatccgctcgtt
ttattagcaaaaaacgaaacaggctatcagcatttaataaaaataagcagtacgattcaa
acgaaaacacaagaaggaattccagaaaaatggttatggcattatcgtggcggattaatt
gcactaaccccaggaaaaagcgggcaaattgaaacattgcttgcccataacgaaataaca
aaggcaaagcaagtgttagaacgatataagcaaatttttggagatgatttttacctttcc
gtacagcgaggagaaaataagcagcaagaaccgtatgagcagcagttgattcatttaagc
aacgaaaccaataccccgcttgtggcaacaaacgatgttcaatatattgaaaaagaagat
gcgtttgtgcagcactgtttattagcgatcaaacaaggcgcggtgataaaaacggggatg
gcgacagatggagaacgatatttaacatcgccagaggaaatgaaaaagcggttttctgat
ttgcctgaggcggtggaaaacagcaggaaaatcgcggatcaatgccatcttcatatcagc
ttggacacattaaagctgccgaaataccctgttccagaaaaggaaaacgcagatcattat
ttgcggcgcctttgtctgaaaggactatatgaacgagtttcgtccccttctgatgcttac
atcaaacggcttgaatatgaactcgatgtcattcagcaaatggatttcagcgattatttt
cttatcgtttgggattttatgaatttcgctcgaaaaaaagggattgttacgggtccaggg
cgagggtcggcagcaggatcgcttgtcgcgtatacactttatattacagacatcgatccg
attcaatacgggctattatttgagcggtttttaaatccagaacgggtgtcgatgccggat
attgatattgattttcccgatgaccggcgtgaagaagttattcaatacgtcgccaataag
tatggacaacaatatgtggcgcaaatcattacattcggtacgtttggcgctaaagcggcc
ctccgagacattggcaaagtgttacagattgattcgaaagagatggaaaacatcatcaag
tatgttcctaacaaacatggaataacgcttcaagaagcatatcatcaatcatttgctttt
cgccaagcggttcaagcttcttccttgttgaaacaatggattgcaatcgcaatgaaggtt
gaaggacttccgcgccatacttcgacacatgcggcgggtgtgattattagcagtgagccg
ctttcccaaatcgttccgttgcagcaaggtcatggtgaattgtatttaacgcaatacccg
atggacgtgttagagcggctaggtctattaaagatggattttcttggcttgcgcacgtta
acattgcttgaacatatatgccgtcttattcagcaacaaactggaaaaaccatcgatgtg
cgttccattccgcttgatgaccgcaaaacatacgagctggtcagcaagggagacaccaat
ggaatttttcagttagagtcggatgggatgaagcaggtattaaagcaattgaagccgtca
caatttgaggatatcgtggcggtgaacgcgttatatcggcctggaccgatcgattacatt
ccttcgtatataaagagaaagcacggagaagaaaacgtttcttatcttcatccagattta
gcgccgattttagcgccgacatatggtgttcttatttatcaagaacaaattatgcaaatc
gctgcgaacattgccggtttttcgctaggaaaagcagatttattgcgccgggcagtcgcg
aaaaagaaaaaagaaattttagatcaacagcggaatgagttcgtacaaggctgtatcgac
caaggttatgacgaagggtttgcaaatgatgtatatgatatgattgtccgttttgctaat
tatgggtttaaccgaagtcatgccgttgcttatagcatgctttcctaccaacttgcttat
ttaaaagcccattatccgctttatttttatacagcattattaacgagcgtgatcggagac
gaagaaaaagtatctttatatatttatgaagcaagacgaaaacagattgaaatattgccg
ccttcgattaatcaaagccgttattctttctcagtggagcatgaaaagattcgctacagt
ttagccgcgattaaacatgttggaatagcggcagtcaaagcgattgtacaagagcgaaaa
aaggggccttttgcggacttttttgatttttgtgttcgcttattcggaaaaggcatcaac
cgaaaaacgatagaatctcttattttgtcaggctgctttgatgaatttggaatcgaaaga
gcatcattattagcaagcgtcgatgttgctttagaacatgcgcagcttgttggtccgtat
gtcgaagaaggattattttcagatatatcattgaagccaaaatatgtagaagcaccttct
ttgtcattagaggaaaagttaatgtacgaaaaagaattgctcggtgtttatgtttctcct
cacccaacatctgcttatcggaaggtgttccgtttggatggtgtccgctcagtcatgagt
gtaataagggaaaaaacggactttcctgttaaagtgggtgtatatattgtggaagagaga
aaaacacgtacgaaaacaggagaggaaatggctttctttacggttagtgatgaaagcggg
gaaatggatgtggttgcgtttccagatgtatatcgtcgttattcttcagttttaaaaaag
ggaacagtgcggttattagaaggaaaagtagaggttcgtaaagggaaagcgcagctagtc
attcgcaaagcagacgtacctgcgatggaggcgctttatgtaaaaattcgtccggaacat
atagcgtctggaaaattgtttacgctaaaagagctgctgcaaaaatatcatggaaaaacg
cctgtctttctatattacgagcaagagcaaaagatggtgaagcttacggaagaatatgat
gtcgctttaacagatgaatgtatcgcttcattgaaagcgctgctaggggatgaacatatt
gtagtaaaataa
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integrated database retrieval system
