Parageobacillus toebii NBRC 107807: DER53_05265
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Entry
DER53_05265 CDS
T06505
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptb
Parageobacillus toebii NBRC 107807
Pathway
ptb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DER53_05265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptb03021
]
DER53_05265 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptb03400
]
DER53_05265 (rpoC)
Enzymes [BR:
ptb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DER53_05265 (rpoC)
Transcription machinery [BR:
ptb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DER53_05265 (rpoC)
DNA repair and recombination proteins [BR:
ptb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DER53_05265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIQ32329
LinkDB
All DBs
Position
1031270..1034869
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNKFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRAYREKYGQSFQASMGAEAIKKLLQ
DIDLEKEVATLKEELKTAQGQRRARIIKRLEVLEAFRNSGNDPAWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVERGLAHNIKSAKRKIERVHPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEREGAIGEGMVFKDTDEALLAYHNGYVHLHSRIAVH
AGSLKNETFTEEQNNKLLITTVGKLIFNEILPNSFPYINEPTTENIEGRTPDKYFLDKGA
NVKEEIRKRELVPPFKKKVLGQIIAEVFKRFKITETSKMLDRMKDLGFQYSTKAGITIGV
ADIVVLPEKQEILEEAQAKVDTVLKQFRRGLITDEERYERVISIWSEAKDKIQDRLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGILARALTDGAEVIVKLE
ERLVGRYAQKTVKHPETGEILVRKDEMITEDIANAIIKAGIKEVWIRSAFTCNTRHGVCK
KCYGRNLATGADVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQELF
EARNPKGQAVISEIDGIVTSINQTRDRQYEIVVKGEVETRSYIAPYNARLKVEEGQQVER
GQELTEGSIDPKQLLKVRDVTSVQEYLLREVQKVYRMQGVEISDKHIEVMVRQMLRKVRV
IDAGDTDVLPGTLLDVHQFTDVNEKALLEGKRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMARYRKVKPVIKKEANEDAVTSK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataaatttgagtacatgaaaatcgggctcgcttcaccggagaaaatc
cgttcttggtcgtacggtgaagtaaaaaaaccagaaaccattaactatcgtacattgaaa
ccagaaaaagacggattattttgtgagcgtattttcggaccaacaaaagattgggaatgt
cattgtggaaaatataagcgcgtacgttataaaggtgttgtctgcgaccgttgcggtgtc
gaagtgactcgctcgaaagtccgtcgtgaacggatgggtcatattgaactagcagctcct
gtttcacatatttggtatttcaaaggaatcccaagccgtatgggactcgttttggacatg
tcgccacgtgcgttagaggaagtgatttatttcgcttcatacgttgtgactgatccaggt
gatacgccactggagaaaaaacaattgctttccgaaaaagaatatcgtgcgtatcgtgaa
aaatacgggcaatcgttccaagcctccatgggtgcagaggcaattaaaaaacttcttcaa
gatatcgacttagaaaaagaagtggcaacgttaaaagaggagttaaaaacagcacagggg
cagcgacgcgcccgcattattaagcggttggaagtgttagaggcgttccggaattcagga
aacgatcctgcttggatggtgcttgatgtgcttcctgttattcctcctgaattgcggccg
atggtgcaattagacggtggacgctttgcgacatcggacttgaacgatttgtaccgccgc
gtgattaaccgaaacaatcgtttgaaacgcttgttggatctcggcgcaccaaacattatt
gtgcaaaacgaaaaacggatgcttcaagaagcggtcgatgcattaatcgataacggccga
cggggccgtccggtaacaggacctgggaaccgtccgctaaaatcgctctctcatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttgcttggtaagcgtgtagactattcaggc
cgttcggttattgtcgtcggtccgaacttgaaaatgtatcaatgcggcttgccgaaggaa
atggcgcttgagctctttaaaccgtttgtgatgaaagagcttgtcgaacgtggattagcg
cacaacattaagagcgcaaaacggaaaattgagcgcgtccatccggaagtatgggatgtg
ttagaagatgtgattaaagagcatccggtattacttaaccgtgccccaactcttcaccga
ttgggtattcaagcgtttgagccaacgcttgttgaaggtcgcgcgattcgcttgcatccg
cttgtatgtacagcatataacgctgactttgacggagaccaaatggccgtgcacgttccg
ctatccgcggaagctcaggcagaagcacgattgctcatgctggccgcgcaaaatattttg
aacccgaaagacggaaaaccagttgttactccttcgcaagacatggttttaggtaactat
tatttaacgatggaacgtgaaggagcaatcggtgaaggaatggtatttaaagatacggat
gaggcgttgcttgcgtatcataatggttatgtccatttacattcacgaatcgccgttcat
gccggttcattgaaaaatgaaacgtttacggaagagcaaaataacaaactgcttattacg
acagttggaaaacttattttcaacgaaattttaccaaactcattcccttatattaacgag
ccgacaactgaaaatatcgaagggcggacaccggataaatacttcctcgataaaggtgca
aatgtaaaagaagaaattcgcaagcgcgaacttgttccaccgtttaagaaaaaagtgctc
ggacaaattatcgctgaggtatttaagcggttcaaaattacagaaacatcgaagatgctt
gaccgcatgaaagatttagggttccaatattcaacaaaagccggcattacgattggggtt
gccgacattgtcgtattaccggaaaaacaagaaattcttgaagaagcacaagcaaaagtc
gacacggtcttaaaacaattccgacgcggtttaattactgacgaagagcgctatgaacgt
gtcatttcgatttggagcgaagcgaaagacaaaattcaagacagactgatgaaatcgctc
gataaacgcaacccaatctttatgatgagcgattctggagctcgcggtaacgcatcaaac
tttacgcagcttgccggaatgcgcggtctcatggcaaacccagcgggacgcatcatcgaa
ttgccgatcaaatcttcgttccgtgaaggattaacggtattggaatactttatttctaca
cacggagcgcgtaaagggcttgctgatacagcactaaaaacagcagactccggttatctc
acaagacgtcttgtcgatgtggcgcaagatgtcattgttcgtgaagaggattgcggtacg
gaccgtggtattcttgcaagagcattaacggacggtgcagaagtcattgtcaaactagaa
gagcgtcttgtcggtcgctatgcgcaaaaaacggtgaaacatccggaaacaggcgaaata
ctcgttcgcaaagacgaaatgatcaccgaagatattgcgaacgcgattattaaagcaggc
attaaagaagtatggatccgctctgcctttacatgtaatacaagacacggtgtatgtaaa
aaatgttacggtcgtaacttggcgacaggtgcggatgtggaagttggcgaagcggtcggt
attatcgctgcacaatcgatcggtgaaccgggtacgcagttaacgatgcgtacgttccac
acaggcggtgttgccggcgacgatattacccaaggtttgccgcgtgttcaagagctgttt
gaagcacgtaatccgaaagggcaagcggttatttcagaaattgacggaatcgtcacttcg
attaaccaaacgcgtgatcgtcaatatgaaattgtcgtaaaaggcgaggtcgagacacgc
tcttacattgctccttataacgcaagattaaaagtagaggaaggacaacaagtagagcgt
ggtcaagaacttaccgaaggatccattgatccaaaacaattattaaaagtaagggatgtt
acgtccgttcaagaatatttattgcgtgaagtacaaaaggtatatagaatgcaaggggta
gaaattagcgataaacatatcgaagtaatggttcgtcaaatgcttcgtaaagtgcgcgtc
attgacgcgggggatacagacgtcctgcctggaacgttattagatgtccatcaatttacg
gacgtgaacgaaaaagcgcttcttgaaggaaaacgtccagcaacggctcgcccagtattg
cttggtattacaaaagcatcgctagaaactgattcgttcttatcagcggcatcgttccaa
gaaacgacacgcgttttaaccgatgcggcgatcaaaggaaaacgggatgagttgctcggc
ttaaaagaaaatgttattatcggcaagcttgttccagcaggaactggaatggcgcgctat
cgtaaagtaaaaccggtaattaagaaagaagcaaatgaggacgcggttacttctaaataa
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