Parageobacillus toebii NBRC 107807: DER53_05825
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Entry
DER53_05825 CDS
T06505
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptb
Parageobacillus toebii NBRC 107807
Pathway
ptb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DER53_05825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptb03019
]
DER53_05825
03009 Ribosome biogenesis [BR:
ptb03009
]
DER53_05825
Enzymes [BR:
ptb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DER53_05825
Messenger RNA biogenesis [BR:
ptb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DER53_05825
Ribosome biogenesis [BR:
ptb03009
]
Prokaryotic type
rRNA helicases
DER53_05825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QIQ32415
LinkDB
All DBs
Position
1122324..1123724
Genome browser
AA seq
466 aa
AA seq
DB search
MTTFHELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPL
IEKVDVKNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKR
PHIIVGTPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL
FSATMPEPIRRIAERFMNEPHIVKVKAREMTVPNIQQYYLEVQEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTK
RKMERMKPPTLDEALEGQQRIAVEKLVATVESENLSFYKRAAEELLEEHDSVSLVAACIK
MLTKEPDTTPVQLTEEPPLPVKREKKRGNRPGSQPRERTKKRRVAR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacgtttcatgaattaggattaagcaacgaattaatgaaggcgattcgccggatg
ggatttgaggaaacgaccccgattcaagcggaaacgattccgttaagtctacaaaataaa
gacgtcattgggcaggcgcaaactggcaccggtaaaacggctgcttttggtattccgctc
attgaaaaagtagatgtaaaaaatgaagccattcaaggtcttgttgtggcaccgacgcgg
gagctggcgattcaagtatcggaagaactttataaaattggagcagtcaagcgcgttcga
gtattgccgatttacggagggcaagatattgagcggcaaattcgcgcattaaaaaaacgc
ccgcacatcattgtaggaacgcctggccgaattattgatcatatcaaccgtaagacgctt
cggttagacaacgtgcacaccgttgtgcttgatgaagcggatgagatgcttaatatgggg
tttatcgacgatatcgaagcgattttaagcaatgttcctgaaaaacggcagacattatta
ttttccgcaacgatgccggagccaatccgacgcatcgccgaacggtttatgaatgagccg
cacattgtgaaagtaaaagcgagggaaatgacggttccaaatattcaacaatattattta
gaagtgcaagaaaagaagaaattcgatattttaacgcgtttattggatattcaagcgccg
gagttagccattgttttcggacgtacaaaacggcgcgtggatgaattagcagaagcgctc
aacttgcgtgggtacgctgccgaaggaattcatggcgatttgagccaagcgaaacggtta
tccgttcttcgtaaatttaaagaaggttcgattgaaattttagtcgctacggatgtagcg
gcacgtggactggatatttccggcgtgacgcacgtttacaattttgatatcccgcaagat
ccggaaagctacgttcaccgtatcggccgcaccgggcgcgctggaaaaacaggtgtagcg
atgacgtttgttacgccgcgggaaattggacagcttcataatattgagcgcacgacaaaa
cggaagatggaacggatgaagccgccgacgcttgatgaggcgctagaaggccaacagcgt
atcgctgtggaaaagctggttgcgactgtcgaatcggaaaatctttctttttataaacga
gctgccgaagagttattggaagaacatgattccgtgtcgcttgtcgccgcgtgcattaaa
atgttgacaaaagagcctgatacaacgccagtgcaattaacggaagagccgccgcttccg
gtaaaacgggagaaaaagcgcgggaaccgtccaggcagtcaaccaagggagcgtacaaaa
aaacggcgcgttgcccgttaa
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