Parageobacillus toebii NBRC 107807: DER53_07940
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Entry
DER53_07940 CDS
T06505
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ptb
Parageobacillus toebii NBRC 107807
Brite
KEGG Orthology (KO) [BR:
ptb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptb03400
]
DER53_07940 (addA)
Enzymes [BR:
ptb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DER53_07940 (addA)
DNA repair and recombination proteins [BR:
ptb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DER53_07940 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIQ32726
LinkDB
All DBs
Position
1532163..1535897
Genome browser
AA seq
1244 aa
AA seq
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MNIVFRPKPKESQWTDEQWKAIVADGQDILVAAAAGSGKTAVLVERIIQKITAKEDPIDV
DRLLVVTFTNASAAEMKTRIAEAIERELDKQPNSLHLRRQLSLLNRASISTIHSFCLDVI
RKYYYLIDIDPVFRIADDTEMELLKEEVMEELLEEEYGKADNELFFEVVDRYTGDRSDAE
LQEMILAIYEFSRSHPEPYRWLDQLVAMYDIDEDTPLTQLPYISYLRKYVEMELAAAKRL
IARALQLAHLPGGPLPRAENYRDDLQLIAHLEALLDRSWDELYEAMKSLSLSRLKSCRGD
EYDPQLVEEAKSLRDQAKKKLESLRDNVFSLRPTTWLRHMREMKPVVETIVRLVKQFTEM
FQARKREKGIVDFSDLEHYCLQILRHPDSTDGQWLPSDAALDYRAQFVEVLVDEYQDTNM
VQEAILRLVTKGNEHTGNLFMVGDVKQSIYRFRLAEPMLFLSKYKRFTADGKQSGMKIDL
SNNFRSRAEILHGTNFIFKQIMSETVGEMEYDEAAELKYGAVDYPDNEQAVPELIIIDRN
SKDDEETGEFDTNDLAAAQLEARMMAKKIKEIVSEPFHVYDRKAKRMRRAMYRDIVILLR
SMTAAPQIMEEFRAQGIPVYADLSSGYFQATEISIMLSLLKVIDNPYQDIPLASVLRSPI
VGLNENELALIRIHEKKGTFYEAMVSFLNKTVDDKEEAALQQKLRLFYEQLKHWRTMARQ
RSLADIIWQLYRDTQFYDFVGGLPGGKQRQANLRALYDRARQYETTSFRGLFRFLRFIER
LQNRGDDLGAARSLGEQEDVVRIMTIHSSKGLEFPIVFIAGLSRPFNTRDLYESYLLDKE
LGFAARFVDPKLRISYPTLPQIAIKQKKRLDFLAEEMRILYVALTRAKEKLYLIAAVKDA
EKEVAKWKSTAMEEEWLLPDDVRASARCYLDWIGRALIRHRDGRNFGDLSYVCEKIASHP
SIWHMEVIPASQLYDVDKEAEQMDEQIITALKRGERVPNAGEWKEEVDRLLSWEYAYEKE
MLVRAKQTVSELKRHREIFGENADRMPLHSFSTPLFERPMFMREKTLTPAEKGTAMHIVM
QQVDLTAPITEETVREQIAKLVQMELLTHEQAEAIDISSVVAFFDTEIGKRLRAADEVYR
EVPFSLALPAKEVYEDGVGEERKVLVQGVIDCLFADEKGLVLIDFKTDTVTNRFAGGWHE
AKQVIISRYKTQMQLYRRAVEQIWKINVDECYLYLFDGSHLISI
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtttttcgtccgaaaccgaaggaaagtcagtggacggatgaacaatggaag
gctattgttgcggatggccaagacattttagtggcagcggcggcaggatcagggaaaaca
gcggtgcttgtcgaacggattatccaaaaaattacggcgaaagaagacccgattgatgtc
gaccggcttcttgttgtgacgtttaccaacgcttctgcggccgaaatgaaaacgagaatt
gccgaggcgatcgaacgcgagctggataaacagccaaactcgctccatttgcgcagacag
cttagtttgttgaatcgtgcttcgatttcaacaattcactccttttgtttggacgttatt
cgcaaatattactatttgatcgatattgatcccgtatttcgcattgctgatgatacggaa
atggaattgctgaaagaagaagtgatggaagaactcttggaagaagagtacggaaaagcc
gataacgagctgtttttcgaagtggtggaccgttatacaggggaccggagcgacgctgaa
ctgcaagaaatgattttggctatctatgaattttcccggtcgcatccggaaccgtataga
tggcttgaccaacttgttgcgatgtatgacatagacgaggatactccattaacgcagctt
ccgtatatttcttacttaagaaaatatgtagagatggaattggcagcggcaaaacgcctt
attgcaagagctttacaactggctcatttgcctggagggccgttgccgcgagctgaaaat
tatcgcgatgatttgcagctcatcgcccatttagaagcattgttagaccgctcatgggac
gagctatatgaagcgatgaagtcgttgtcgttatcgcgtttaaaatcgtgccgcggcgac
gaatacgatccgcagctcgtggaagaagcaaaatcattgcgcgatcaagcgaaaaagaaa
ttggaatcgttacgggacaatgtattttctctccgcccgactacatggcttcgccatatg
cgggagatgaaaccggtcgttgaaacgattgttcggttagtaaaacaatttacggaaatg
tttcaagcacgcaagcgtgaaaaaggaatcgtcgatttttcggatttggagcattattgt
ttgcaaattttgcgtcatccagattcaactgacggacaatggcttccgtctgacgctgct
ttggattatcgcgctcaatttgttgaagtgcttgttgacgaatatcaagatacgaacatg
gtgcaagaagcgatattgcggcttgtgacaaaaggaaatgaacataccggaaatttattt
atggtaggtgacgtaaaacaatcaatttatcgctttcgcttggcggagccgatgttattt
ttaagcaaatataaacggtttacggcagacggtaagcaatcgggaatgaaaattgactta
tccaataactttcgcagccgcgcggaaattttgcatggaacgaactttatttttaaacaa
attatgagcgaaacagtcggggagatggaatatgacgaagcggcggaattaaaatatggc
gccgttgactatccggacaatgagcaggcagtgccggaattgatcattattgaccgaaat
agcaaagacgacgaagaaaccggggagtttgacacgaatgatctagcagcagcacagcta
gaagcgcgcatgatggcaaaaaaaataaaggaaatcgtctccgagccgtttcacgtttac
gatcgcaaagcaaaacgaatgcgtcgcgccatgtatcgagacatcgttattcttctccgt
tccatgacggccgctccgcaaataatggaagaatttcgcgcgcaaggtattccggtgtat
gcggatctatcttctggatatttccaagcgacagaaatatctatcatgctgtcactatta
aaagtgatcgataatccatatcaagacataccgcttgcgtcggttttgcgttctccaatt
gtcggtttgaatgaaaatgaattagcgcttattcgcattcatgagaaaaaaggcacgttt
tatgaggcgatggtttcatttttgaataaaacggtggatgacaaagaagaagcagcgttg
caacaaaaattgcgcctgttttacgaacagctaaaacattggcggacaatggcgcgtcag
cgttcgttggcggatattatttggcagctatatcgggatacgcaattttacgattttgtc
ggtggtttgcctggcgggaaacaacgacaagcgaatttgcgcgcgctttatgaccgagct
cggcaatatgaaacgacgtcatttcgaggattgtttcgctttttacggtttattgaacgc
ctgcaaaatcgcggagatgatttaggtgcggcccgctcccttggcgaacaagaagatgtt
gttcgcattatgacgattcatagcagcaaagggcttgaatttccaatcgtttttattgca
gggctatcgcgtccgtttaatacgcgagacttatatgaatcgtatttgcttgataaagaa
ctcgggtttgcggcgagatttgtagatccaaagctgcgcatcagctatccgacattgccg
caaatcgcgataaaacagaagaaacggctcgattttttagcggaagaaatgcgaatttta
tatgttgcgttaacaagggcaaaagagaaactatatttaatcgcagcggtgaaagatgcg
gaaaaagaagtagcaaaatggaaaagcactgcgatggaagaagagtggcttttgccggat
gatgtccgtgcttctgcgcgttgttacttagattggatcggaagagcgctcatccgccat
cgtgacgggcgaaacttcggtgatttgtcctatgtatgtgagaaaatcgcttcccatccg
tctatttggcatatggaagtcattccggcgagccaattgtatgacgtggataaagaagcc
gagcagatggatgagcaaataatcaccgcgttaaaacgaggagagcgtgttccgaacgcg
ggggaatggaaggaagaggttgatcgccttctttcgtgggaatacgcatatgaaaaagaa
atgcttgtccgtgcgaagcaaacggtatctgagttaaaacgacatcgtgaaatttttggg
gaaaatgccgaccgaatgccgctccattcattttccacaccgctgtttgagcgtccaatg
tttatgagagagaaaacattgacaccggcagaaaaaggaacggcaatgcatattgtgatg
cagcaagtcgatttgacagcaccaattacggaagagacggttcgtgaacaaatagccaaa
ttagttcaaatggagctgctaacacacgaacaggcggaagcgatcgatatttcgagcgtt
gttgcgtttttcgacacagaaatcggcaagcgcctacgtgccgcagacgaagtgtatcgt
gaagtgccgtttagcttggcgctgccggcaaaagaagtatatgaagatggtgttggcgaa
gaaagaaaagttcttgttcaaggcgtcattgattgtttatttgctgacgaaaaaggactt
gtattaatcgactttaaaacagacaccgtaactaatcggttcgcaggaggttggcatgaa
gcaaaacaggtgataatatcccgctataaaacacaaatgcagttataccgtcgcgctgta
gaacaaatttggaaaatcaatgtagatgaatgttatttatatttatttgatggctcacat
cttatttccatatag
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