Candidatus Phycorickettsia trachydisci: phytr_10000
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Entry
phytr_10000 CDS
T05372
Name
(GenBank) ATPase AAA
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ptc
Candidatus Phycorickettsia trachydisci
Pathway
ptc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
phytr_10000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptc03400
]
phytr_10000
Enzymes [BR:
ptc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
phytr_10000
DNA repair and recombination proteins [BR:
ptc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
phytr_10000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_12
PIF1
nSTAND3
UvrD-helicase
NTPase_1
T2SSE
RsgA_GTPase
AAA
AAA_22
MobB
NPHP3_N
SLFN-g3_helicase
AAA_28
NAT10_TcmA_helicase
AAA_16
SRP54
DEAD
AAA_14
MeaB
AAA_29
CbiA
cobW
UvrD_C
ABC_tran
PhoH
AAA_7
NACHT
TrwB_AAD_bind
FtsK_SpoIIIE
AAA_23
AAA_24
ATPase_2
nSTAND_NTPase5
KTI12
ResIII
PPV_E1_C
RNA_helicase
Mg_chelatase
AAA_18
AAA_5
DO-GTPase2
Motif
Other DBs
NCBI-ProteinID:
AVP87928
UniProt:
A0A2P1P9H8
LinkDB
All DBs
Position
complement(1123670..1126153)
Genome browser
AA seq
827 aa
AA seq
DB search
MVSMTSNLDTKQNTHFERVVGTVDRVIYTNTENGYNVLEVKVKGISKPVTVVGSLGPVNP
GEVIEAIGSWKLDKTYGRQFSSTFIKTNLPSDIAGIKKYLASGMIYGIGEHYADLIVNTF
KEDTIAIINEDVTRLGQVRGIGAKRLKSIQDSWQEQKVIKDLMLFLHSSGIGSSLAIRIY
RKYGQDAVSQIKENPYILSQEVSGIGFATADKIAQSLDIELTSPFRVKAGITYVLQDYSN
QGSSAVPKTNLLKDASILLNLPKGLIETTLLSLVQEDKMIVEVKLNDLPAYSLSYLFHSE
KAIAQKLIDLHKAHIPLNIDFEESINFVEQDLKIILADKQKEAIKSAIDNNVVVITGGPG
TGKTTILNSLIRILKKHNLKVSLCAPTGKAAKRMSQVSGVGAQTIHRLLGISFPGCTYSN
LKCDVLIIDEMSMVNINIMFAVCKSMEEIKRLVLVGDANQLPPIGPGKVLQDIIESKVLS
VVTLDKIFRQAQTSKIITNAHKINNGQMPDLQNADDFYFIRASSDINRYIISCIERLKKN
FDPLRDIQVIAPMQKGETGVIALNQLLQKSLNKSNIKITRHGHAFLLGDKVMQIVNNYTK
DIYNGDVGIICNIDQENQGIKVNFEGQIIHYDFNELDQLTLSYANTVHKSQGSEYKVVIL
TLCMEHFIMLKRRLLYTALTRAKEKVIIIGEERAISLAVKSLEVQNRYSKLQNNLVNLIT
DPLVASTIIEQKIFDVIFEYLNKNISKGKLYRLRFIAFDSNYSWQAIAEEHDGLKYFVAS
QNTPLGYEIANFQKKADVYFERLKEASKVLFIHTAKNIVDIITINKK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggtatctatgacaagtaacttagatacaaaacaaaatactcactttgaaagagtagtg
ggaactgtagaccgggtaatttatacaaatactgaaaacggatataacgttttagaggta
aaggtcaaaggaatatccaaacctgttactgttgttggatccctaggaccagttaatcct
ggcgaggtaattgaagcgattggttcatggaagctcgataaaacttacggcagacaattt
agctcaacgttcataaagaccaatcttccatcggacatagcaggtataaagaagtactta
gcatcaggcatgatttatggtatcggcgagcattatgctgaccttattgtcaatactttt
aaggaagatacaattgcaattatcaatgaagatgtaactagactaggtcaggtgaggggg
ataggagccaaaagacttaaaagcattcaagatagctggcaagaacaaaaagttatcaaa
gatctaatgctgtttcttcattcaagtgggatcggaagttctttagctattagaatatat
cgtaaatatggccaagatgcagtaagtcaaatcaaagaaaatccttatattttatctcaa
gaagttagtggcattggctttgctacagcagataagattgcccaaagtcttgatattgag
cttacttcacctttcagagtcaaagcaggtattacttatgtcttacaagactacagtaat
caaggtagctctgctgtacctaaaacaaatttactcaaagatgcaagtatattacttaac
ttacctaaaggactaatagaaacaaccctgctatctctagtccaagaagataaaatgatt
gttgaagtcaaattaaatgatctgcctgcatattctttgagttatttatttcattcagaa
aaagctatcgctcaaaaacttatagacttacataaagcacatattcctttaaatattgat
ttcgaagaaagcatcaattttgtagaacaagatctgaaaattattttagctgataagcaa
aaagaagcaattaagagcgctatagataacaatgtggttgtcattactggaggacctggt
actggtaagacaactatcttaaatagcttaatcagaatactaaaaaagcacaacctcaag
gtctctttatgcgctccaacaggaaaggctgctaaacgtatgtctcaagtatcaggtgta
ggagcccaaacaattcataggctgctaggtatctcgttcccaggatgtacatattctaac
ctcaaatgtgacgtacttatcatagatgaaatgtccatggtaaacatcaatatcatgttt
gccgtttgcaaatctatggaagaaataaaaagactagttctagtaggcgatgcgaatcaa
ctaccacctataggtccaggtaaggtgttacaagatatcattgagtcgaaagtcttatcc
gttgttacgttagataaaattttcagacaagctcaaacaagtaagattataactaacgct
cataaaatcaataatggtcaaatgcctgacttacaaaatgcagatgacttttactttatt
agagcttcaagcgatataaataggtacataatatcctgcatagaaaggcttaagaaaaac
tttgaccctctaagagatatccaagtcattgctcctatgcaaaaaggagagacaggagtc
atagctttgaatcaactactacagaaatccttaaataaatctaatatcaaaattacaagg
catggtcatgcttttcttttgggcgataaggttatgcagatagttaataattatactaaa
gatatttataacggtgatgtagggattatttgcaatatagaccaagaaaaccaaggcatt
aaagtaaattttgaaggccagattattcattatgactttaacgaattagatcaactcacc
ttatcttatgcaaacaccgtccataagtctcaaggatctgaatacaaggtagtaatacta
acactttgtatggagcattttattatgcttaaacgaagactactttatacagctttgacc
agagcgaaagagaaggtcatcataataggggaggagagggcgatctctttagctgttaag
tctttagaagtacaaaacagatactccaaactccaaaataatctagttaatctgataaca
gatcctttagttgcttcaactataattgaacaaaaaatatttgatgtaatatttgaatat
ctgaacaagaatatttccaaaggtaagttataccgcttaagatttattgcatttgatagc
aattattcttggcaagctatagcagaagaacatgatggtttaaaatattttgttgcctca
caaaatactcctttaggatatgagattgcaaattttcaaaaaaaagcagatgtatatttt
gaacgcttaaaagaagcatcaaaagtgttgtttatccatacggcaaaaaatattgttgat
atcataactatcaataaaaagtaa
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