Candidatus Phycorickettsia trachydisci: phytr_1620
Help
Entry
phytr_1620 CDS
T05372
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ptc
Candidatus Phycorickettsia trachydisci
Pathway
ptc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
phytr_1620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptc03021
]
phytr_1620
03019 Messenger RNA biogenesis [BR:
ptc03019
]
phytr_1620
Transcription machinery [BR:
ptc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
phytr_1620
Messenger RNA biogenesis [BR:
ptc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
phytr_1620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
ATPase_2
Spore_III_AA
AAA_22
OB_RNB
AAA
NACHT
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AVP87121
UniProt:
A0A2P1P777
LinkDB
All DBs
Position
192457..193830
Genome browser
AA seq
457 aa
AA seq
DB search
MANDVDVEVSPQRKPRVVIDKRVEQTVERNPDQPLLKLEDIKNLSLYDLQTKVSELGIEN
FGVMSRQEMIFIILKKAIEKGSTVIGRGVLEVLADGFGFLRSGEANYQTGGDDIYVSPSQ
IRRFGLRTGDILEGPIRAPKNGDKYFAILKIDTVNNLDPASSNHRVFFDDLTPLYPDEKF
DLEFKTPTQDLSTRVVELITPIGKGQRALIVAPPRTGKTILLQNIAHAITENHPEVYLIV
LLIDERPEEFTDMVRSVKRGNKNVEVVSSNFDEPTTRHVQLAEIVIEKAKRLVEQKRDVV
ILLDSITRLARAYNAVMPSSGKVLTGGVDANALQRPKRFFGAARNVEQGGSLTIIASALV
ETGSRMDEVIYEEFKGTGNCEIVLTRTLADKRIYPAIDINKSGTRKDELLVPREIMKKMW
ILRHITQQMNNVESLENLLDRVKSTKCNMDFFNSMNS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggctaatgacgtagacgttgaagtaagtcctcagagaaaacctcgagtggttatagat
aaaagagttgagcaaactgttgaaagaaatccagatcagcccctgcttaaactagaagat
attaagaacctatctctatatgatctgcaaactaaagtatcagagttgggaatagaaaat
tttggtgtaatgagtcgtcaagagatgatctttattatcttaaagaaggctatagagaag
ggtagcacagttattggtcgaggagttttggaagtccttgctgacggttttggcttttta
aggtcaggggaggcaaattatcaaaccggaggggacgatatttatgtttctccaagccag
attagaagatttggtttaagaactggtgatattttagaaggtccaattagggcccctaaa
aatggtgataaatattttgcaatattaaagatagatacagtaaataatctagatcctgca
agtagcaatcatagggtattttttgatgatttgacccctttatacccggatgaaaaattt
gatctggaattcaaaactccaactcaagatctaagcactagggtagtggaattaattaca
cctattggaaaaggtcaaagggccttgattgtagctcctccaaggacgggtaagactatt
ttgctccaaaatattgcgcacgcaattaccgaaaatcatcctgaagtgtacctaatagta
ttgcttatcgatgagcgtcctgaagaatttactgatatggttcgttcagtaaagcgaggt
aacaaaaatgtagaagttgtgagttcaaattttgatgagccaactacccgtcacgtacaa
cttgctgagattgttattgagaaagctaagaggttagttgagcaaaaaagagatgttgtg
atacttctagactcaattacaaggcttgcaagggcatataatgctgtaatgccttcatct
ggtaaggttcttacaggtggtgttgatgcaaatgcgttgcaaagaccaaaaagatttttt
ggggcagctcgtaacgtagagcagggtgggtcacttacaatcatcgcatcggcccttgtt
gaaaccggctcaaggatggatgaagtaatttatgaagaattcaagggcacaggtaactgt
gagatagttttaacaagaactttagctgataagaggatatatccagcaattgatatcaat
aagtctggtactcgtaaagatgaattacttgttccaagggagataatgaaaaaaatgtgg
attctaaggcacataacccaacaaatgaataacgtagagtcactagagaatttattagat
agagtaaaaagtacaaaatgtaatatggacttttttaactctatgaactcttga
DBGET
integrated database retrieval system
