Candidatus Phycorickettsia trachydisci: phytr_4070
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Entry
phytr_4070 CDS
T05372
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptc
Candidatus Phycorickettsia trachydisci
Pathway
ptc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
phytr_4070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptc03019
]
phytr_4070
03009 Ribosome biogenesis [BR:
ptc03009
]
phytr_4070
Enzymes [BR:
ptc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
phytr_4070
Messenger RNA biogenesis [BR:
ptc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
phytr_4070
Ribosome biogenesis [BR:
ptc03009
]
Prokaryotic type
rRNA processing factors
phytr_4070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
AvrB_AvrC
AF0772_C
Nop5_56-rel_N_Arc
Motif
Other DBs
NCBI-ProteinID:
AVP87358
UniProt:
A0A2P1P7W2
LinkDB
All DBs
Position
complement(453702..455540)
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AA seq
612 aa
AA seq
DB search
MKKTILVDARYPRHMRAALIDENKSIEEFEWEMPEPQIRGNIYLAKVSRIEPALQAVFIT
YENGKSGFMPFSEIHPDLFILPENKESAAQHEIPLPQPSENIETSDQTEENLSNDIDIEE
LEKKAFDDNSIKIDFETLNDEIESVRERYQNMYKKYKVQDVIEKDQILLVQAIKEPKGNK
AAFFSTFISLAGKFCVLMANTPEHHGISRRIVNSEERKRLKDIIHTILEEVDDQRFSLTI
RTAGVDRSLEEIRKDYEYLARMWNKINQTVAKSKAPCIVHTEECMISKIIRDMFDDRVQE
LIIEGHKHYKQALYFFEQILPSAASKIIEHKSNEPIFSAYEIEEQVMGLYQPIVPLPSGG
YIVINPTEALTSIDVNSGKSINEKNIEETALKTNIEAAKIVAKHLRLREISGLIVVDFID
MQESKNRRIIEQVFKEALSRDRARMQVNSISNLGLMELSRQRLKPSFLESHSSMCKYCSG
KGLVRSQEANSIVMLRTIAKELSNEGADVVNIFAHIDSISYIFNKKRKEIEFLENQFGVD
LNLHEDHNATAESFAIEKISYKAKKAPKLEVITDNEEPAKTEEETKEKPMRKRRSNFKSR
PKRKVNQTASGG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacaatattagtagatgcaagatacccccgtcatatgcgggccgcgttaatt
gatgaaaacaaatcaatagaagagtttgagtgggaaatgccagagcctcagattagaggt
aatatatacttagccaaggtttcaagaatcgaaccggcattgcaagcagtgtttatcaca
tatgaaaacggcaaaagcggttttatgccattttccgaaattcatccagacctctttata
cttccagaaaataaggaatcagcagctcagcatgagatacccttaccacaaccttctgaa
aatatagaaacttcagatcaaacggaagaaaatttgtctaacgatatagacatagaggaa
ctggagaaaaaagcttttgatgacaactcgataaagattgatttcgaaacactaaatgat
gagatagagagtgtcagggagcgttatcaaaatatgtacaaaaaatataaagtacaggat
gttatcgaaaaagatcagatacttttagtacaagcaattaaagagcctaagggaaataaa
gcagctttctttagcacgtttatatctcttgctggaaaattttgtgtgttaatggcaaat
acaccagaacaccatggaatatcaagaagaatagttaattcagaggagagaaaaaggctc
aaagatattatacatacaatacttgaagaagttgacgatcaaagattcagcctaacaata
aggacggctggggttgatcgttcattggaagaaataaggaaagactatgagtacttagca
aggatgtggaataaaattaatcagactgtagctaagtcaaaagctccatgtatagtacac
acagaggaatgtatgatttcaaaaattatacgtgatatgtttgatgaccgtgtacaagag
ctgatcattgaaggacacaaacattataaacaagctttatacttctttgagcaaatttta
ccttctgctgcctcaaaaattattgaacataaatcaaatgagcctatattcagtgcctat
gaaatagaagagcaggtaatggggctataccaaccaattgtccctctgccatccggtgga
tatattgtaatcaatccaacagaagcccttacctctattgacgtaaattctggtaaatca
atcaacgaaaaaaacatagaagagacagctttaaaaacaaacattgaagcggcaaaaatt
gttgcaaagcatttgagattacgcgaaatctctggattaatcgtagttgattttattgat
atgcaagagtctaaaaatcgtagaattatagagcaagtcttcaaagaagctttaagtaga
gatagagctagaatgcaggtaaatagtattagtaatttgggattaatggagttatctcgt
caaagactaaagccaagctttttagagtctcatagctctatgtgtaagtattgtagtgga
aaaggcttggtaagatctcaagaggcaaattctatagtaatgcttcgtacaattgcaaaa
gaattgtcaaacgaaggagctgatgtagtaaacatctttgctcatattgactcaatttct
tatatatttaataaaaagcgcaaagaaattgaatttttggaaaatcagtttggtgtggat
ttaaatctacatgaagatcataatgcaaccgccgaaagctttgctatagaaaaaatatcc
tataaagctaagaaggctccaaagcttgaggttataacagataacgaagagcctgcaaaa
acggaagaagagacaaaagaaaagcctatgcgtaagagacgcagcaatttcaaaagtcgc
cctaaaaggaaagtaaaccaaacggcttcaggagggtaa
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