Candidatus Phycorickettsia trachydisci: phytr_5890
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Entry
phytr_5890 CDS
T05372
Name
(GenBank) hypothetical protein
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
ptc
Candidatus Phycorickettsia trachydisci
Pathway
ptc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
phytr_5890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptc03400
]
phytr_5890
Enzymes [BR:
ptc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
phytr_5890
DNA repair and recombination proteins [BR:
ptc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
phytr_5890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
RecJ_OB
DHQ_synthase
Motif
Other DBs
NCBI-ProteinID:
AVP87532
UniProt:
A0A2P1P8D6
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All DBs
Position
665354..666715
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AA seq
453 aa
AA seq
DB search
MTLFETAKLSDGPSLFHEYEYSVSQISSEIKTIIEANLGYVRVKGEISGLKIAASGHGYF
NLKDEGAVLACTCWRSAMSKINIKLEDGVEVVAVGKISTYAGQSKYQLSVDKVEISGIGN
LMKILAERKEKFEKEGLFDKAYKKPLPFLPKTIGVVTSITGSVIKDIIHRISDRFPSQVL
IWPVTVQGENAAKEISDAINNFNAQAGELRPDVIIVARGGGSIEDLWAFNEEVVVRSVFS
SQIPIISAVGHETDFTLIDFVADVRAPTPTAAAEFAVPVLKDLKFSLNNYINILIEGLKN
YFHNKEKLLAAYRGSLDLDIFISQKQQRLDDLCFALLELPDKYFQIKHLELSKIDVSSID
LSYFLSNLNLTLKGQETKLKHEITIFLDKKTAEINLHQSLLETLDIKNVLKRGFAIIKQD
DRIISYKKEFDNCTQVEMQFQDGSIIADVNVKN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgactctatttgaaactgctaaattatctgatggcccaagcctttttcatgaatacgaa
tattctgttagtcaaatctcaagtgagattaaaacaattattgaggcaaaccttggttat
gtaagggttaaaggcgaaatatcaggcttaaaaattgccgcatctgggcatggttatttt
aatctaaaagatgaaggagcagttctggcctgtacctgctggagatcagccatgagtaaa
atcaatatcaaactagaagatggcgttgaagtagttgctgttggcaaaatttctacttac
gcaggtcaatccaaatatcaattgagcgttgataaagtagaaatctctggcattggtaat
ttgatgaagatactggcagagcgtaaagaaaaattcgaaaaggaaggattatttgataag
gcttacaaaaaacctttaccatttttacccaaaactataggagttgttacttctatcaca
ggttctgttataaaagacataatacaccgtattagtgatcgttttccttcgcaggtactt
atctggccagtaacagtccaaggagaaaatgctgctaaagaaatttctgatgctattaac
aactttaacgctcaagcaggagaactacgtcctgacgtaataattgtagcacgaggagga
ggctctattgaagatttatgggcatttaatgaggaagtagtagtaagatctgtatttagt
tcccagatacccatcatttctgcggtgggacatgaaacagattttaccctaattgatttt
gttgcagatgtcagagcccctactcccactgcagctgcagaatttgctgtaccagtatta
aaagatctcaaatttagtctgaacaactatataaatattttaatagaaggacttaaaaat
tattttcataataaagaaaaattgcttgcagcttacagaggtagtctagatcttgatata
tttatatcccaaaaacaacaaaggcttgatgatttatgctttgctcttttagaactacct
gataaatattttcaaattaaacatcttgaattgtctaaaatagatgtctcttcaattgat
ctgtcatactttttatctaacctaaatctgacattaaaaggccaagaaactaagctgaaa
catgaaatcaccatatttttggacaaaaaaacagccgagattaacttacatcaatcacta
cttgaaactttagatataaaaaatgttctcaaaaggggctttgctatcatcaaacaagat
gatagaattatcagttataaaaaggaatttgataattgcactcaagtagagatgcaattt
caagatgggtcaattattgcagatgttaatgtgaagaattga
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