Pseudoalteromonas tetraodonis: PTET_a2021
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Entry
PTET_a2021 CDS
T05282
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PTET_a2021 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptd03400
]
PTET_a2021 (sbcB)
Enzymes [BR:
ptd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PTET_a2021 (sbcB)
DNA repair and recombination proteins [BR:
ptd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PTET_a2021 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PTET_a2021 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PTET_a2021 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Plexin_cytopl
Motif
Other DBs
NCBI-ProteinID:
ATD03399
LinkDB
All DBs
Position
I:1946258..1947703
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AA seq
481 aa
AA seq
DB search
MAYQEQNQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPH
PEACLITGITPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNF
YDPYEREYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAA
HDALSDVTATIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQ
GCTTWVAPMSFHPLNKNAVICFDLTQNPQVLLDLNVEELRKRLYTKRIDLAEGDLPVGLK
LVHLNKCPILAPAKTLLPENAARLGIDREQCLTNLAILKANTELRDKVTEVFNEQGDYSA
TTNVDYLLYDGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTL
NQQELDQWRQYCQSKLMHGEDQPSISAQDFMITLENLAHEHDDSEKNLTILKALYNYAQS
M
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcaagagcaaaaccaagcaacaatctactggcacgactatgaaacgtggggg
gcaagcccacaaaaagataagccgagccaatttgcaggtgtacgcaccgatcttgattta
aatattattggcgagccgcttattgagtactgtaagccgcaagcggattatttaccgcat
cctgaggcgtgtttaatcaccggtattaccccgcaagtggcgatgcaaaaaggcttagtt
gaggctgagtttattgctaaaattcatgccgaatttagcgtgcccaatacctgtgtagct
ggttataacagtattcgctttgatgatgaagtaagccgatatagcttttatcgtaacttt
tacgacccatatgagcgtgaatataaaaacaataacagtcgttgggatattatagattta
gtgcgtgcctgctatgcacttcgccctgagggcattgagtggccattaaaagaagatggc
agcccaagttttaaacttgagcatttaactgtagctaatggtattgaacatgccgctgcg
cacgatgcattaagtgatgtaacggctaccattgcactggctaaattaataaaagaaaag
cagcctaagctgtatcacttcttttttagtttgcgcaataaaaaagcccttgctgaattg
gtggacgtgtttaacatgaccccattagtgcatacatcgtcgcgtattccagcaacccag
ggttgtaccacgtgggtggcacctatgagctttcatcctcttaataaaaacgcagttatt
tgttttgatttaacccaaaacccacaggtattacttgatttaaatgtagaagagctacgc
aagcgtttatacaccaaacgtatagatttagcagagggtgatttacccgtaggtttaaag
ctggtgcatttaaacaagtgccctattttagcaccagctaaaacactgctgcctgaaaac
gctgctcgcttgggtattgaccgagagcaatgcttgactaatttagccattttaaaagcc
aataccgagcttcgcgataaagtcactgaggtatttaatgagcaaggcgattacagcgcc
accacgaacgtggattacttattatatgatgggtttactagccatgctgataaagctaaa
tttgcgattattcgtgatgcaaaacctgaagacttggcaagtttaaagcttgaatttgaa
gatcctaaatttaatactttgttgtttagataccgcgcgcgaaactggccacaaacgcta
aaccaacaagagcttgatcaatggcgtcaatattgccaaagcaagttaatgcatggcgaa
gatcagccatcaatcagcgcacaagattttatgatcacccttgaaaacctagcgcatgag
catgatgacagcgaaaaaaatcttacaattttaaaagcgctgtataactacgcgcaaagc
atgtaa
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