Pseudoalteromonas tetraodonis: PTET_a3136
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Entry
PTET_a3136 CDS
T05282
Symbol
rpoD
Name
(GenBank) RNA polymerase primary sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTET_a3136 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptd03021
]
PTET_a3136 (rpoD)
Transcription machinery [BR:
ptd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTET_a3136 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ATD04373
LinkDB
All DBs
Position
I:3003698..3005542
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AA seq
614 aa
AA seq
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MDPTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIKVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIISGFFDPDAEEAPPIAATN
IGSELSEKQLDDSDDDDDDSDDEDEEEVDTGPDPEEARVHFENLRDLYTKARETFDNKGR
SHPESQAAILEIGELFRTFKLVPKQFDRMVNNMREMMDRVRVQERLIMKHAVQVSKLPKK
TFVKHFANNETDTAWLDIEIAANEKHSAKLEEVKPEILRCISKLTSMEESTGLSIERIKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPNP
EELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPIDSATMESL
RGATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSDLLKSFLDAK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactcctcagtcacaattaaaacttctgattcaaaaaggtaaagagcaaggt
tacttaacttttgcagaagttaatgatcaccttccacaagatattatcgactcagatcaa
gtagaagatatcattagcatgattaatgacatgggtatcaaggttagcgaaaacgcgcct
gatgccgatgaattaatgatgcaagaaaccacgacagacgaagacgcagcggaagctgcc
gctgcagcccttgctactgtagaaaaagaaattggccgtacaactgaccctgttcgcatg
tatatgcgtgaaatgggtactgttgaacttcttacccgtgaaggcgaaattgttatcgct
aagcgtattgaagaaggcattaaccaagttcaaatttcggttgctgaataccctgaagcg
atcacttacctacttgaacagtgggataagtttgaagcagaagagatgcgtcttagcgat
attatctctggctttttcgatcctgatgcagaagaagcaccacctattgctgccaccaac
attggttctgaattaagtgaaaaacagcttgatgatagcgacgatgatgacgatgacagc
gatgatgaagacgaagaagaagtagatacaggtccagatcctgaagaagcgcgcgtccat
ttcgaaaatttacgtgatttatacaccaaagcacgtgaaacattcgataataaaggtcgc
tctcatccagagtctcaagccgctattttagaaatcggtgagctgttcagaacctttaaa
ctcgtacctaaacagtttgatcgcatggttaataacatgcgtgaaatgatggacagagtt
cgcgttcaagaacgtcttattatgaagcatgcagtacaagtttcaaagctgccaaagaaa
acctttgttaagcattttgcaaacaacgaaactgacacagcatggcttgatattgaaatt
gcagcaaacgaaaagcattcagctaaacttgaagaagtgaagcctgaaatacttcgttgt
attagcaaacttacttcaatggaagaaagcactggcttaagcattgaacgtattaaagat
ataaaccgtcgcatgagtattggtgaagcgaaagcgcgccgtgctaaaaaagagatggta
gaagcaaacttacgtcttgtaatttcaatcgctaaaaaatacaccaaccgtggtttacag
ttcttagatttaatccaagaaggtaacattggtctgatgaaagcggttgataagtttgaa
taccgtcgtggttataagttttcaacttatgctacgtggtggatccgtcaagcaattacg
cgctctattgctgaccaagcaagaacaatccgtattccagtacatatgattgaaacgatc
aataaattgaaccgtatttcacgtcaaatgttacaagaaatgggtcgtgagccaaatcca
gaagaattagctgaacgcatgatgatgcctgaggataaaatccgtaaggtacttaagatt
gcaaaagagccaatttcaatggaaacacctattggtgatgatgaagattcgcacttaggc
gacttcatcgaagataccactattgattcgccaatcgattcggcaacaatggagtctctt
cgtggcgcaactaacgacgtgctcgctggcttaacagcccgtgaagcgaaagtactacgt
atgcgttttggtattgatatgaataccgaccacacgttagaagaagtaggtaaacagttt
gacgtaacacgtgaacgtattcgtcaaattgaggcgaaggcactgcgtaaattacgtcac
ccttctcgctctgatttactgaaaagctttttagacgctaaataa
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