Pseudoalteromonas tetraodonis: PTET_a3508
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Entry
PTET_a3508 CDS
T05282
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ptd
Pseudoalteromonas tetraodonis
Pathway
ptd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTET_a3508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptd03019
]
PTET_a3508
Enzymes [BR:
ptd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTET_a3508
Messenger RNA biogenesis [BR:
ptd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTET_a3508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
CMS1
DXP_reductoisom
Motif
Other DBs
NCBI-ProteinID:
ATD04681
LinkDB
All DBs
Position
I:complement(3328907..3330208)
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AA seq
433 aa
AA seq
DB search
MTSAASPSTFNDLGLIPELQARLTDLQYSQPTPIQAKAIPNVLAGSDLIAGANTGSGKTA
TFALPMLQTLFLAKGANKTPSKDNFVSGLILVPTRELAVQVADNVKSYSANFNGAIKTVA
VFGGVSVNTQMQALRGGADIIVATPGRLLDLISSNAIKLDKVNTLVLDEADRLLSLGFTE
ELANLLALMPAKKQTMLFSATFPEQVTLLTQELLTNPVEIQVQSKEESTLVQRVFTVNKG
EKTTVLAHLIKQHKWRQALIFVNAKKDCEHLAGKLEKRGVNAQVFHGDKGQSERSRVIEK
FKAGEIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLID
YEDFHHFRIIEKKNKLRLEREEVTGFAVNQANLDAAQALKNDKPMAKPEGTGKKKKKNKA
NQEDDVWSGWRKR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgacctcagccgcaagccctagtacttttaacgatcttggccttattccagagctacaa
gctcgtttaactgatttgcaatatagccaacctacgccaattcaagctaaggcgatccca
aatgtacttgctggtagcgatttaattgcgggggcaaataccggctcaggtaaaacagca
acctttgctttgcctatgctacaaacgctatttttagcaaaaggcgcgaataaaacgccg
agcaaagataactttgtttcagggcttattttggtacctacccgtgagttggcagtgcaa
gtagctgataatgttaaatcgtattctgctaactttaatggcgccattaaaacggtggcg
gtatttggtggtgtgtcggttaatacccaaatgcaggcactacgtggtggtgccgatatt
atcgtagcaaccccagggcgtttactcgacttaatatcaagcaacgccattaagctcgat
aaagtaaataccttagtgcttgatgaagccgaccgcttattaagcttaggctttaccgaa
gagttggctaacttattagcgcttatgcctgctaaaaagcaaaccatgttgttttcagcg
actttcccagagcaagtaacgcttttaacgcaagagctgttaaccaaccctgttgaaata
caagtacaaagtaaagaagagagcacgcttgtacagcgcgtttttacggttaataaaggc
gagaaaaccacggttttagcgcacttaattaagcagcacaaatggcgccaagcgctgatt
tttgtcaatgctaaaaaagactgtgagcatttagcgggcaaacttgaaaagcgtggcgtg
aatgcacaagtattccatggtgataaaggccaaagcgagcgttctcgggtaatcgaaaag
tttaaagcgggtgagattgaagtgcttattgctaccgatattgcagcccgtggtttagat
attgaaaagctaccagtagtaattaactttaacttaccgcgcagccctgctgattacatg
catcgtattggccgaagcggccgtgccggtgaagtaggtttagcgttatcgttaattgat
tatgaagactttcatcactttagaattattgaaaagaaaaacaaactacgtttagagcgc
gaagaggttacaggctttgctgtaaaccaagccaaccttgatgccgcacaagcacttaaa
aatgataagccaatggcaaagcctgaaggtaccggtaagaaaaagaagaaaaacaaagcc
aaccaagaagatgacgtatggagcggctggagaaaaagataa
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