Pyrenophora teres: PTT_01995
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Entry
PTT_01995 CDS
T01613
Name
(GenBank) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pte
Pyrenophora teres
Pathway
pte03013
Nucleocytoplasmic transport
pte03015
mRNA surveillance pathway
pte03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pte00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTT_01995
09122 Translation
03013 Nucleocytoplasmic transport
PTT_01995
03015 mRNA surveillance pathway
PTT_01995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pte03019
]
PTT_01995
03041 Spliceosome [BR:
pte03041
]
PTT_01995
Enzymes [BR:
pte01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTT_01995
Messenger RNA biogenesis [BR:
pte03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PTT_01995
Spliceosome [BR:
pte03041
]
Complex C
Other components
EJC/TREX
PTT_01995
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PTT_01995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4844
Motif
Other DBs
NCBI-ProteinID:
EFQ96278
UniProt:
E3RDD4
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEIPSNGAAAATKADLTAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GAATILVMCHTRELAYQIRNEYNRFAKFLPDVRVGVFYGGTPVQKDIELLSNKDTHPHII
VGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSA
TLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQV
ELPEFPENGVESATYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgactactccgacgaggagatccagcccaccgagata
ccttccaacggcgccgcagctgcaaccaaggccgacctcaccgccggtgacgctgcaggc
gacaagaaaggcagctacgtcggcatccactccaccggtttccgcgacttcctgctcaaa
gatgaactcgtccgagcgatcacggattgtggcttcgaacatccttccgaggtccaacaa
gttacgattccccaagccattctaggaaacgatgtcctctgccaggccaagtccggtctc
ggaaagacggccgtcttcgtgctcgcaactctccagcagatggacgagaagcccgagccc
ggtgctgcaacaatcttggtcatgtgccacactcgtgaattggcctaccagattcgcaac
gagtacaaccgcttcgccaagttcctgcctgatgttcgggttggtgtgttctacggaggt
acacccgtacaaaaggacattgagctccttagcaacaaggatacccacccgcacatcatt
gtcggaactcccggtcgtatcaatgccctcgttcgtgacaggcatcttcgccttgcaaac
ctcaagcactttgtcctcgacgagtgcgacaagatgctcgaccaacctgacatgcgcaac
gacgtccaggccatcttccgcgccacaccccagcacaagcaggtcatgatgttttcagcc
acccttaacaaggatgtccgagtcgtctgcaagaagttcatgcaaaacccgctcgagatc
tacgtcgatgacgagaagaaactcacactccacggtttgcagcaatactacatgaagctt
gacgagaaggaaaagaaccgtaagctcaacgatcttctggacagcttggaattcaaccag
gtcatcatcttcgtccgttcgactctccgctgctcggagcttgacaagcttcttcgcgag
tgcaactttcctagtactgcagtccactctggtatcagccaagaagagcgaatcaagcgc
tacaaggagttcaaggagttccagacccgtatctgtgtctccactgacatcttcggccgt
ggtatcgatgtcgagcgtatcaacgtcgccatcaactacgacatgcccgacaaggctgat
gcctaccttcaccgtgtcggtcgtgccggtcgtttcggaaccaagggtcttagtatctcc
tttgtgagcagcccggacgacgaggctgttctcaagtcaattgaggagcgcttccaggtc
gagcttcccgagttccccgaaaacggagtcgagtcggctacatacatggacaactag
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