Pyrenophora teres: PTT_08308
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Entry
PTT_08308 CDS
T01613
Name
(GenBank) hypothetical protein
KO
K12600
superkiller protein 3
Organism
pte
Pyrenophora teres
Pathway
pte03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pte00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTT_08308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pte03019
]
PTT_08308
Messenger RNA biogenesis [BR:
pte03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
PTT_08308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_17
TPR_19
TPR_12
TPR_14
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_Slam
RPN7
E_motif
DUF4192
Motif
Other DBs
NCBI-ProteinID:
EFQ94118
UniProt:
E3RJI4
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MASHLDSAHDLLDLDISTLRQFVELFPNEGLSKVITGWLSSGISKYPLTDEGDSRQGPDL
SEGGVALTQDVPVSQEDCLVLMTEGIGEAGKSTLAYCLLGDYYLFLEEYESAVEITRKGL
KYAAQEAKKTDLSFQRTRDALSSTLGTALVYYQAPRNHAEAKAIFESILKRKPQFTAALI
GIGLVLEEEQEYGQAFEFLEKALQQDPSNGRIGAESAWCQALAGDYKTGLERLQGYLDYP
ELDASKQRGRELRAQTLYRIGVCLWELDPSKAARKDRQRTYAKLLAAIKVNPNYAPAYTL
LGIFYEDYNRDRKRARQCFQKAFELSPSEVVAAERLARLFANQGEWDIVEVVSQRVVDSG
KARQTPGSKRKGVSWPFSALGVVQMNKQEYQKSIVSFLSALRISPDDYYSYVGLGESYHN
SGRYNSASRAFNYAENPTDGVVLKRTDEERWFTKYMLANVNRELSEYDEAISGYEAVLAD
RPKEFGVSIALLQTLVEKAWHCVETGFFGEAIDSATRGIEVAATITEYKPDAFNLWKAVG
DACSLFSWVQERLKQFPFELMESVLRSPSDMHIDLDEHKDIDGLGQNVLEQFCKDEDTPL
SKALKASILAQKRAISSCAHDIHAQAVAWYNLGWTEYRAHVCLEQEGVEKSKLTAYLRAA
MKCFKRAIELEAGNSEFWNSLGVITTTLSPKVAQHAFVRSLHLNERSVHTWTNLGALCLL
QNDHELAHTAFSRAQSQDPDYSLAWVGEGIIALLTGNASEALSHFTHAFELSESSLLLTK
RQYAVSAFDFLVSSPSSSSNITNLIQPLFALQQLSLQAPYDIPHKHLASLFLERVGDYDA
AVTALQAVNEKVEQEYEKSESLASLARVASAKADLARNLLAVESYKTAVEEAETALDLLS
ELDRDEKQSTMSGDQLARTKLSARLTAGLAHYFSGSFDAAIPYFRKSLETTSSNPDIICI
LAEVLWAKGGDNEKQVARDQLFTAIEKHEGHVGLLTLIGAMTVLDDDLETMEAIKDDLDR
MRANKQLTDEQLARVEKVIEAISLSLGGEEQELHEAQRSIMLSPWKHTGWTELADATDGN
SFCSTIARENAMRNAPPNGTLDAGSLAGAMSNTGNVGDAQRAILLAPWCTQGWSGLSECI
RI
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcacctcgatagtgcgcacgacctgctggacctcgacatctcaacattacgc
caattcgtcgagctattcccaaatgagggtctttccaaagtcatcacgggatggttgagt
agtggtatttcaaaatatccactgactgacgagggagactcaagacaagggcccgaccta
agtgagggcggggtagcgctcacgcaagatgtacccgtgtcgcaagaggattgtttagta
ctgatgactgagggcatcggcgaggctggcaagtccacactcgcgtactgcttgcttggc
gactactacctttttctggaggagtacgaaagcgcagtagaaatcacacggaaaggtcta
aaatacgccgcacaagaagcaaagaagacagacctgtcatttcagagaactcgcgatgct
cttagcagcacccttggtacagccttggtctattatcaagcgcctaggaatcacgcggag
gccaaagccatcttcgagtccattctgaaacggaagccacagttcactgccgctctcatc
ggtattggattagtattggaggaagagcaggaatatgggcaggcttttgagtttctcgag
aaagctctgcagcaagacccctccaatggccgcatcggtgcagaatcagcatggtgtcag
gcactcgcaggtgactacaagactggtctagagagacttcaagggtacctcgattacccg
gaactagatgcgtccaagcagcgtgggcgcgagcttcgtgcgcagacactctatagaata
ggtgtttgcctatgggagcttgacccttctaaagccgcgcgaaaggaccgacaaagaacg
tatgcaaagttgctagcagcaatcaaagtaaaccccaactatgcacctgcatacacgctg
ctcggtatcttctatgaagactacaacagagaccgtaagcgagcaagacagtgtttccaa
aaggccttcgagctctcaccctcagaggttgttgcagctgagcgcttagctcgcctcttc
gccaaccaaggcgagtgggatattgtggaggtcgtctcacaaagagtggtcgattcaggc
aaggctcgtcaaacgcctggctcaaagcggaagggcgtgagctggccattttcggcgctt
ggcgttgtacaaatgaacaagcaagagtaccagaagagtatcgtctcttttctatccgct
cttcgcatcagtcctgatgactattactcttacgtcggcctaggcgagagctaccacaac
tctggacggtacaattcagcatcccgtgctttcaattacgctgagaatcccacggatggc
gtcgttctaaagaggacagacgaggagagatggttcacaaagtacatgctggctaatgtt
aatcgcgagttgagcgagtatgacgaggccatatcggggtacgaagcagtactggcggat
cgtcctaaggaattcggcgtttcgatagcacttttgcagacgcttgtggagaaagcctgg
cattgcgttgagaccggtttctttggagaggctatcgacagtgccactcgcggcatcgaa
gtagcggctacgattaccgagtacaagccagacgccttcaatttgtggaaagctgtcgga
gacgcgtgcagtctgtttagttgggtccaagagagactgaagcagtttcccttcgagctg
atggaaagtgtgttgcgtagtccgtcggatatgcacatcgaccttgatgagcacaaagac
attgatgggctgggacagaatgttttggagcagttttgcaaagacgaagacaccccactc
tccaaagccctcaaggcgtccattcttgcccaaaaacgagccatctctagttgcgcccac
gacatacatgcccaagcggtagcatggtacaatcttggctggactgagtatagagcacat
gtatgcttagagcaagaaggtgttgagaaatctaagctcacagcctaccttcgagcagcc
atgaagtgtttcaagcgcgccatcgaactagaagctggcaactctgaattctggaactca
cttggtgttatcacgaccacactcagcccgaaggtcgcacagcacgctttcgttcggtca
ttacatctcaacgagagaagcgtacatacatggacgaatcttggggccttgtgtctgcta
cagaatgaccatgagcttgcacatactgccttctcgcgagcacaatctcaggatcccgat
tactcgttggcttgggtcggcgagggcatcattgcgctgctcacaggaaatgccagcgaa
gctttatcccacttcacacatgcttttgagctctctgaatcttctttgcttctcacgaag
cgacagtatgcagtgtcagcatttgacttccttgtatcatcaccttcatcttcgagcaac
attacgaatctcatccagcctctcttcgcccttcaacagctaagcctgcaagctccctac
gatatcccgcacaaacatcttgcctctctattcttggagcgtgttggtgattatgatgca
gctgtcactgctctgcaggctgtgaatgagaaagttgagcaagagtacgaaaagtctgag
tcgctggcatctcttgctcgtgttgcgtctgcaaaagcagatttagctcgtaaccttctt
gccgtcgagtcgtataagactgctgtagaagaagccgagacggcgctagacttgttgtca
gagctcgatcgtgatgaaaaacaatccaccatgtccggcgaccagcttgcaaggaccaaa
ctatcagcacgcctaacggccggactagcgcattatttcagcggatcgttcgatgcagcc
ataccgtatttccggaaatcgctcgagactactagctccaatcccgacatcatctgtatc
cttgcagaggtactgtgggcaaagggcggagacaacgagaagcaggttgcccgcgaccaa
ttatttacagcgatcgagaaacacgaaggccatgttgggctattgactttgattggtgcg
atgacagtgcttgacgatgatttggagaccatggaagctatcaaagacgacttggatcga
atgcgcgcaaacaagcagctaaccgatgagcagctagctcgagtagagaaggtgatcgaa
gccatctcacttagcctaggcggtgaagagcaagagttgcacgaggcgcaacgaagtata
atgttgtctccctggaagcacacaggctggacagagctcgcggatgctacggatggtaat
tcgttttgcagcacaatcgcacgagaaaatgcgatgcgcaacgcaccgccgaatggtacc
cttgatgccggcagtctcgcgggtgcgatgagcaatacaggcaacgtcggggatgcgcag
agggcgatattactggcaccttggtgcacacagggttggtcgggtctatccgagtgcatc
agaatatag
DBGET
integrated database retrieval system
