Pyrenophora teres: PTT_11224
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Entry
PTT_11224 CDS
T01613
Name
(GenBank) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pte
Pyrenophora teres
Pathway
pte03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pte00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PTT_11224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pte03021
]
PTT_11224
03019 Messenger RNA biogenesis [BR:
pte03019
]
PTT_11224
Transcription machinery [BR:
pte03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PTT_11224
Messenger RNA biogenesis [BR:
pte03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PTT_11224
U7-dependent histone pre-mRNA processing factors
PTT_11224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
EFQ91831
UniProt:
E3RR19
LinkDB
All DBs
Position
Unknown
AA seq
705 aa
AA seq
DB search
MAAKRKAASMAPEDDDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHE
GLSAMPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQ
DSVRVGNMSSNSETKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAM
FLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLM
KAITDVLNRGGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQ
TYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPG
MMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQ
RENEQTMIPRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSF
NAQKAIPTKIYSPANCEELRIPFKTDKIAKVVGKLASITPPVPRSLTPGGSEVNQKGGKE
EESEKVDLISGVLIQNDFKISLMAPEDLKEYAGLTTTTILCRQHLTLSAAGIDLIRWALE
GTFGAIKESSLTDATVNGKMNGAENGHKEEADEEVSRTQTKFTVMDCVGVLVKNGGRVEV
EWEGNVINDGIADAVLAVLFTVESSPAAVRRKSSCLTPIHSEQHN
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaaagaggaaggcagcgtccatggcgcccgaggacgacgaccccatagatcca
tctgatgagctcatgtttctctgccttggcggtggtaacgaagtcggtcgctcatgtcac
atcatccagtacaagggcaagacggtcatgctcgatgccggtatgcatcctgcgcacgaa
ggcttgtctgccatgcccttttacgacgatttcgatctcagcactgtagacgtgctacta
atatcacattttcacgtcgaccatgccgcatctctgccctacgtgcttgccaagaccaac
ttcaagggccgcgtcttcatgacacatcccacaaaggccatctacaaatggcttatccaa
gactctgtccgcgtaggcaacatgtcaagcaattccgagaccaagatacaaatgtacact
gaggccgaccatctcaacacctaccctatgattgagtccatcgacttttacactacacac
actgtctctggtgtccggattaccccatatcccgccggccacgtcttaggagcagccatg
ttcctgatggagattgcaggcctgaagattttgttcactggcgactactcgcgggaggac
gaccggcatttggtatccgcctctgtaccagctggcgtcaaggttgatgtgctcattacc
gagtcaacctttggtatttccatgcacactccacgtgtcgagcgagaagcacagcttatg
aaggccatcacagacgttctcaaccgcggtggccgtgctcttctcccagtcttcgctcta
ggccgagctcaagagctgttgcttatcctggacgaatactggagcaagcatccagaggtc
cagaagatacccatctactacaactccagcttagcgcggaaatgtatgcaagtctaccaa
acctacgtttccgccatgaatgacaatatcaagcgcctcttcgccgagcgcatggccgaa
gctgaggctgcaggagacactggacgacgtggagcttgggacttcaagtttgtgaggtca
ctcaagagtcttgaacgttttgatgacttgggaggctgtgtcatgcttgcttcgcctggt
atgatgcaatctggcacttctcgtgagctgcttgagcgatgggcacccgatccaaggaat
ggtgtcatcattaccggttattccgtcgaaggcacaatggcgaagcaaatcgttcatgag
ccagatcagattcctgcgattatgacgcgagcaagcaacacagcacgacgtccaggccag
cgagaaaacgaacaaaccatgataccccgtcgatgcacagtgcaagaatacagttttgca
gctcacgttgatggaaaggagaacatggagtttgtgcaggaggttgcggcaccagtcgtt
atccttgtccacggtgaaaagggtaacatgactcgtctaaaatccaaactgctctctttc
aacgctcaaaaggccattcccacaaagatctactcccccgcaaactgcgaagaactccgc
atccccttcaagacggataagattgccaaagtagtcggtaaactagcttccatcacaccg
cctgtaccacgctccttgactccaggtggcagtgaggtgaaccaaaaaggaggcaaggaa
gaggaaagcgagaaggtggatttgattagcggagtgttgattcagaacgacttcaagatc
agtctgatggcgccagaggatctgaaagaatacgctggtttgaccacaacgaccattctc
tgcaggcaacatctcaccctcagtgctgcaggtatcgacctgatacgatgggcgctcgag
ggcacattcggtgccatcaaggagtctagtctcaccgatgccacagtcaacggtaagatg
aacggcgccgaaaacggacacaaggaagaagcagacgaagaagtcagcagaacacaaacc
aaattcacagtcatggactgcgtcggcgtcctagtcaagaacggaggccgcgtagaagtc
gaatgggagggaaacgtaatcaacgatggaatcgcagatgccgtcctcgctgtcttgttt
accgttgaatcctcacccgcagctgtgcgacgtaagtcatcttgcctaacccctatacat
tccgaacaacacaactaa
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integrated database retrieval system
