KEGG   Pyrenophora teres: PTT_11246
Entry
PTT_11246         CDS       T01613                                 
Name
(GenBank) hypothetical protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
pte  Pyrenophora teres
Pathway
pte03018  RNA degradation
pte03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pte00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTT_11246
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTT_11246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pte03019]
    PTT_11246
   03041 Spliceosome [BR:pte03041]
    PTT_11246
Messenger RNA biogenesis [BR:pte03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PTT_11246
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PTT_11246
Spliceosome [BR:pte03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PTT_11246
 Complex C
  U2 snRNP components
    PTT_11246
SSDB
Motif
Pfam: LSM Hfq SM-ATX
Other DBs
NCBI-ProteinID: EFQ91825
UniProt: E3RR37
LinkDB
Position
Unknown
AA seq 98 aa
MLFFSFFKTLVEHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDELRWPHLCSTKDM
FIRGSVVRYVHLPSGAVDTALLEDATRREAEAAKNKAK
NT seq 297 nt   +upstreamnt  +downstreamnt
atgctcttcttcagcttcttcaaaacgctcgtcgagcacgaaatcacggtcgaacttaag
aacgaagtgcaaatccgcggcacgctaaagagtgtggatcaatatctcaacatcaagctg
gacaatgcagaggcggtggatgagctgaggtggccgcatctgtgctcgaccaaagacatg
ttcattcgcgggtccgtggttcgatacgtacacctcccctctggcgccgtggacactgcc
ttgctcgaggacgcgacgaggagagaggcggaagcggcgaagaacaaggcgaaataa

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