Pyrenophora teres: PTT_11246
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Entry
PTT_11246 CDS
T01613
Name
(GenBank) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
pte
Pyrenophora teres
Pathway
pte03018
RNA degradation
pte03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pte00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PTT_11246
09123 Folding, sorting and degradation
03018 RNA degradation
PTT_11246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pte03019
]
PTT_11246
03041 Spliceosome [BR:
pte03041
]
PTT_11246
Messenger RNA biogenesis [BR:
pte03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PTT_11246
mRNA degradation factors
5'-3' decay
Lsm complex
PTT_11246
Spliceosome [BR:
pte03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PTT_11246
Complex C
U2 snRNP components
PTT_11246
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
SM-ATX
Motif
Other DBs
NCBI-ProteinID:
EFQ91825
UniProt:
E3RR37
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MLFFSFFKTLVEHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDELRWPHLCSTKDM
FIRGSVVRYVHLPSGAVDTALLEDATRREAEAAKNKAK
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcttcagcttcttcaaaacgctcgtcgagcacgaaatcacggtcgaacttaag
aacgaagtgcaaatccgcggcacgctaaagagtgtggatcaatatctcaacatcaagctg
gacaatgcagaggcggtggatgagctgaggtggccgcatctgtgctcgaccaaagacatg
ttcattcgcgggtccgtggttcgatacgtacacctcccctctggcgccgtggacactgcc
ttgctcgaggacgcgacgaggagagaggcggaagcggcgaagaacaaggcgaaataa
DBGET
integrated database retrieval system