Piliocolobus tephrosceles (Ugandan red Colobus): 111554292
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Entry
111554292 CDS
T07491
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pteh
Piliocolobus tephrosceles (Ugandan red Colobus)
Pathway
pteh03013
Nucleocytoplasmic transport
pteh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pteh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111554292 (UPF1)
03015 mRNA surveillance pathway
111554292 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pteh03019
]
111554292 (UPF1)
Enzymes [BR:
pteh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111554292 (UPF1)
5.6.2.5 RNA 5'-3' helicase
111554292 (UPF1)
Messenger RNA biogenesis [BR:
pteh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111554292 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
111554292 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111554292
NCBI-ProteinID:
XP_023085472
Ensembl:
ENSPTEG00000029288
LinkDB
All DBs
Position
21:complement(34275898..34314075)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgccgatacgcagggctccgagttcgaattcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggtcccggcggtggcggcgcggga
ggcccaggcggcgcgggcgcgggcgccgcggcgggacagctcgacgcgcaggttgggccc
gaaggcattctgcagaatggggctgtggacgacagtgtagccaagacgagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaattgtggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa
gctgactcagtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcgcagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacag
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacgctggaggacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggccgactacgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagatcgctattgagctgcggagcagcgtgggtgcacccgtggaggtgactcacaacttc
caggtggattttgtgtggaagtcgacctcctttgacaggatgcagagtgcgttgaaaacg
tttgccgtggacgagacctcagtgtccggctacatctaccacaagctgctgggccacgag
gtggaggacgtaatcatcaagtgccagctgcccaagcgcttcacggcgcagggcctcccc
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcaaagaccgctgagcctg
atccagggcccgccaggcacggggaagacagtgacgtcggccaccatcgtctaccacttg
gcccggcaaggcaacgggccggtgctggtgtgtgctccgagcaacatcgccgtggaccag
ctaacagagaagatccaccagacggggctgaaggtcgtgcgcctctgtgccaagagccgc
gaggccatcgactccccggtgtctttcctggccctgcacaaccagatcagaaacatggac
agcatgcctgagctgcagaagctgcagcagctgaaagatgagactggggagctgtcgtct
gctgacgagaagcggtaccgagccttgaagcgtaccgcggagagagagctgctgatgaac
gcagatgtcatctgctgcacgtgtgtgggcgccggcgacccgagactagccaagatgcag
ttccgctccattttaatcgatgaaagcacccaggccaccgagccagagtgcatggttccc
gtggtcctcggggccaagcagctgatccttgtaggtgaccactgccaactgggcccggtg
gtgatgtgcaagaaggcagccaaagccgggctgtcacagtcgctcttcgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccgtccaacatcttctacgagggctccctccagaatggtgtcactgcagcggat
cgtgtgaagaagggatttgacttccagtggccccaacccgataaaccgatgttcttctac
gtgacccagggccaagaggagatagccagctcgggcacctcctacctgaacaggaccgag
gctgcgaacgtggagaagatcaccacgaagttgctgaaggcgggcgccaaaccggaccag
attggcatcatcacgccctacgagggccagcgttcctacctggttcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttt
cagggacgcgagaaggacttcatcatcctctcctgtgtgcgggccaacgagcaccaaggc
attgggtttttaaatgaccccaggcgtctgaacgtggccctgaccagagcaaggtacggc
gtcatcatcgtgggcaacccgaaggcgctgtcgaagcagccactctggaaccacctactg
aactactacaaggagcagaaggtgctggtggaggggccgctcaacaacctgcgcgagagc
ctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggagcccgcttc
atgaccacagccatgtatgatgcccgggaggccatcatcccaggctccgtctatgatcgg
agcagccagggccggccttccagcatgtacttccagacccacgaccagattggcatgatc
agtgctggccccagccatgtggctgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccaccgcctggctattttggacaagccaatgggcccgctgcaggccgaggc
accccaaaaggcaagactggccgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagccaagccagccaggatgtggcatcacagcccttc
tctcagggcgccctgacgcagggctacatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagttaccttggtgacgagtttaaatca
caaatcgacgtggcgctctcgcaggactccacgtaccagggagagagggcgtaccagcat
ggcggggtgacggggctgtcccagtactaa
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