Parasteatoda tepidariorum (common house spider): 107436222
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Entry
107436222 CDS
T06106
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03013
Nucleocytoplasmic transport
ptep03015
mRNA surveillance pathway
ptep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107436222
09122 Translation
03013 Nucleocytoplasmic transport
107436222
03015 mRNA surveillance pathway
107436222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107436222
03041 Spliceosome [BR:
ptep03041
]
107436222
Enzymes [BR:
ptep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107436222
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107436222
Spliceosome [BR:
ptep03041
]
Complex C
Other components
EJC/TREX
107436222
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107436222
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107436222
NCBI-ProteinID:
XP_015903334
LinkDB
All DBs
Position
8:complement(7225873..7264823)
Genome browser
AA seq
423 aa
AA seq
DB search
MTENEAELLDYEDEDEQETTVPETVVETKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDNQVSVLVMCHTRE
LAFQISKEYERFSKYMPTIKVSVFFGGMTITNDEKILKSNCPHIVVGTPGRILALVKSKK
LNLRYIKHFVLDECDKMLEALDMRRDVQEIFRSTPHEKQVMMFSATLSKEIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVRTVPRCMALA
QLLVEQNFPAIAIHRAMTQEDRLSRYQQFKDFHKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDESDAKILNEVQERFDVNISELPEEIDISSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacgaagctgagttattggactacgaagatgaagatgaacaggaaactact
gtacctgaaacagtagttgagacaaagaaaccaaccggtggttatgtttcaatacatagc
tccggatttcgagatttcctactgaaaccagagctactaagagcaattgttgattgcggg
tttgaacatccatctgaagtgcaacacgaatgtattcctcaagcaattcttggtatggat
atattgtgtcaagctaaatctggcatgggtaaaactgcagtttttgttttggcaacgttg
cagcaattggatcctgttgataatcaagtttctgtcttggtcatgtgtcacacaagagag
ttagctttccaaatatccaaggagtatgaacgtttttcgaaatacatgccaacaatcaaa
gtgagcgtcttctttggtggaatgactataacaaatgatgaaaaaattctgaaatccaac
tgtccccacattgttgttggaactcctggaagaatattggcattagtaaaaagcaaaaaa
cttaatctccgttacatcaaacattttgttctggatgaatgtgataaaatgcttgaagct
ttagacatgagaagagatgttcaagaaatcttccgcagcaccccccacgagaagcaggtg
atgatgttcagtgcgacgctgagtaaagaaattcgtcccgtctgcaagaagttcatgcaa
gatccgatggaagtgtacgtggacgatgaagctaagttaacccttcatggactgcaacaa
tattacgtgaagttaaaggacaatgaaaaaaaccggaaattatttgagcttcttgatctt
cttgaatttaaccaggtggtaatctttgttcgaactgtacctaggtgcatggccctggca
caacttctggtggagcagaatttccctgcaattgctattcatcgcgctatgacacaagaa
gataggttatccaggtatcagcagtttaaagatttccacaagcgcatccttgtagctacc
aatctatttggaagaggaatggatattgagagagttaatattgtttttaactacgacatg
ccagaagattcagatacttatttgcacagggttgctcgtgctggtcgatttgggactaaa
ggtttagccataacttttgtttctgatgaatcagatgccaaaatactgaatgaagttcaa
gaaagatttgatgttaacatttctgaattacctgaagaaattgacatttcttcctacatt
gaaggaaggtaa
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