Parasteatoda tepidariorum (common house spider): 107438324
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Entry
107438324 CDS
T06106
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107438324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptep03021
]
107438324
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107438324
Transcription machinery [BR:
ptep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107438324
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107438324
U7-dependent histone pre-mRNA processing factors
107438324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
107438324
NCBI-ProteinID:
XP_015906078
LinkDB
All DBs
Position
9:30204436..30218222
Genome browser
AA seq
1186 aa
AA seq
DB search
MIFFDKCVCLRRNGKHNLKTIVKYSSKTDSKTSLMDSTRKSSRHSSSSKEEYKRYSSSSR
SSTRTETTEAQKSSLPSKRKAEAETDLVQKLKKKTVECRRSTAAQFFVEEETVQESVTAD
RIVQLLNDAVTPKEENGKLKNLLIVKELIIQKEPKLLDNFLDEVVSFQHDTDPEVRRFIV
QFIEDVCRRDLQFLPKVINNLLMMLHDESVKVQKKVIQTTTHLYPLTIRYFVNAKHVDDV
MEAIWASMTELKLTIVSLLESDNEGVRTSATKFMEHVILAQTFKDQYADPKNTDLSLDEI
PVILKVFRPRKMEEEAKDIFQRIVAFHCASHVSLCNLMACMQVLTSIGRQRFEFFPKVLE
AFELLHANLPPTLGQSQVSSVRKNLKLELFQLVKHPGAVEFQSRISIMLSDLGASPQQIS
RCFPDAEAIKKPSVKIEDRSAKQEDIPSSSRPRKIKSSLEKGTKAKNTAIDITAEDLVPK
FHSINVVDLVLVSMLSLPDVMPTNFQSTYTPIAAAGTEAQIKHLARLLATQLTLAGIGKG
VEQMKHKMENEKVESDEDEAASNVPKPIQTLVSQTTEMKPKKQGLVLMPSGGSQIKANRI
SKKIDFQAIAKSMNEEESNNFCRAAYNRILNAEKMITKRGAAPIRTKLLTNLATRFRGDF
SIDLKNHIMENPRNRLDLAFSWIYQEYSAYRGFECSIESHVENYEEAVDSLLGGILKSDE
ENHALYTRFFLDVPFITEGMAESLKTVCIDESSTAEALEMAESMSFRRPTKKLLFLGVIC
DLTLHENCDIRTKAVKAAVDIHESGHMRSFIEAFALRSLKFLLHTDPPTDFFLFFKQRPV
TWSEDLTKVCLHLYLTLLPINHRLIQDLGTVYVEATGDIKRIILRALEAPVKGMSMASPE
LLLFVENCPKGAETLITRIIHILTDKAPPSAELVARVRDLYRKRVPDVRFFIPIINGLSK
REIISALPELIQQKTPVVKEVLHRLLGSNFSSPISPAELLVALHNIDPSKCNLKIIIKAT
SLCLEEKNVYTQVVLAMVIQELMEQTPLPILLMRTVIQSLANYPHLLDFVTHILQRLILK
EVWKQKKIWEGFIKCCQRTKPKSFQVLLQLPAPQLEEVLSSCPDLRESLCLHVKSFNEGQ
KANIPKAVIDVLGVDLSQDDKKSEDGSIKNDEENIKEPLPPGQDHL
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgattttttttgacaaatgtgtttgtttaaggagaaatgggaagcataatttaaaaaca
attgtaaaatattcttcaaaaactgattccaagaccagtctgatggattcaaccaggaaa
agttcgagacattcctcatcttctaaggaagagtataaacgatattcttcttcaagtaga
agctctactagaacggaaacaactgaagctcagaaaagctctctcccctccaaaagaaaa
gctgaagcagaaacagatttggttcaaaaattaaaaaagaaaactgtagaatgtcgacgt
agcactgctgctcaattttttgttgaagaagaaactgtacaagaatcagtgactgctgat
cgaattgtccagctcctcaatgatgctgttacaccaaaggaagaaaatggaaagctgaaa
aatctgctcattgtcaaagaactgatcatacagaaagaacctaagttgctggacaacttt
ctggatgaagtagtaagttttcaacatgacactgatcctgaagtacgcagattcattgta
caattcattgaggatgtttgtaggagagacttacaatttcttccaaaagtaatcaacaat
ctgttgatgatgctacacgatgaatcggtcaaagttcagaaaaaagttatccaaacaaca
actcatctttatcctctaactattcgttattttgtaaatgcaaaacatgttgatgatgta
atggaagctatttgggcttcaatgacagaactaaaattaacaattgtctcgctcttggag
tctgacaatgaaggagtccgtacttcagctacaaaatttatggaacatgttattcttgca
caaacattcaaagaccaatatgcagatccgaaaaacactgatttatctttggatgagata
ccagtgatattaaaagtttttcgacccaggaagatggaagaagaagccaaagatattttc
cagcgaattgttgcttttcattgtgcttcccatgtgtctctttgtaaccttatggcttgc
atgcaagttttaacttcaataggaaggcaaagatttgagttttttcctaaagttttagaa
gcatttgaattgcttcatgcaaatctgccaccaacgttgggtcaatcacaagtgagtagt
gtaagaaagaatttaaaattagagctctttcaattggttaagcatcctggcgctgtcgaa
tttcaatcaagaatatcaatcatgctctctgatttaggtgcatcacctcagcagataagt
agatgctttccggatgcagaggcaatcaaaaaacctagcgtcaaaatagaggacagaagt
gcaaaacaggaagatataccatcttcatcaagacctcgcaaaataaaatccagtcttgag
aaaggaactaaagctaaaaacacagctattgatattacagctgaggatttagtacccaaa
tttcacagtataaatgttgttgatttagtattagtaagcatgttaagtttgcctgatgtt
atgcctactaactttcagtccacatacactcctattgcagctgctggcaccgaagctcag
attaaacatctggctcgtcttttagccacacaattaactttggctggaattggaaaaggt
gtggaacaaatgaaacataaaatggaaaatgaaaaagtggaaagtgatgaggatgaggca
gcctctaatgtacccaaaccaatccaaactctagtaagccaaactacagaaatgaagcct
aaaaagcaagggcttgttttaatgcctagtggtggctcccaaataaaagctaatagaata
tctaagaaaatcgacttccaagccatagcgaaatcaatgaacgaagaagagtctaataat
ttttgtagagctgcttataatcgaatcttgaatgctgaaaaaatgattactaaaagaggt
gctgctccaattagaacaaaattgcttactaacttagctacccgatttagaggtgatttt
tccattgatttgaaaaatcatatcatggaaaatccccgcaatagattagatctagcattt
tcttggatatatcaagaatattctgcttatagaggatttgaatgttccatagaaagccat
gttgaaaattatgaagaagcagtcgattctctattgggtggcattttgaagagtgacgaa
gaaaaccatgctctttacactcgttttttcttggatgttccatttattacagaagggatg
gctgagtctctgaaaactgtttgtattgatgaatcatctactgctgaagctcttgaaatg
gctgaaagcatgagttttagaagacctacaaagaagttgctgtttttaggagtaatatgt
gaccttactcttcatgaaaattgtgacatacggacaaaagctgtaaaagcagcagttgac
atccatgaaagtggccatatgaggtcattcattgaagcttttgctttaagaagtctcaag
tttttgttacatactgacccaccaactgatttcttcctgtttttcaaacaaaggcctgtt
acttggtctgaagatttgactaaagtatgtttacatttgtatttaactttgttgcccata
aaccatcgcctcattcaagatcttggaactgtttatgttgaagccactggtgatattaaa
agaattattctccgtgccctcgaagcaccagttaaaggcatgagcatggcctctcctgaa
ctcttactctttgttgaaaactgtcctaaaggagccgagacattaattacaagaatcatc
catattttgactgacaaagcaccaccatcagccgaacttgttgctagagttcgagattta
tatcgtaaaagagttccagacgtacgtttctttattccaatcattaatggtctttctaag
cgtgaaataatttctgcattacctgaattgattcaacaaaaaacaccagtagtaaaagaa
gttttgcatcgtcttttaggaagtaatttttctagcccgatatctccagctgaactattg
gtcgctctgcataacattgatccttctaaatgcaaccttaaaataattatcaaggctact
tcactctgtttggaagagaaaaatgtttacactcaagttgtcttggcgatggttattcag
gagctgatggaacaaactcctttgcctattttattaatgagaactgttatacaatcttta
gcaaactatcctcatcttttggattttgttactcacatattgcaacggttaatattgaaa
gaagtctggaaacagaagaaaatttgggagggttttattaagtgctgccaaagaactaaa
ccaaaatcttttcaggtgttgttgcaattgcctgccccacaattggaggaagtcctaagt
tcgtgcccagatttacgtgaatcattatgcctacatgttaaatcatttaatgagggacag
aaggcaaatattcctaaagctgtgatagatgtccttggtgtggatttgtctcaagatgat
aaaaaatccgaagatggctctataaaaaatgacgaagaaaacattaaagaaccattacca
cctggacaagatcatttgtaa
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integrated database retrieval system
