Parasteatoda tepidariorum (common house spider): 107439069
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Entry
107439069 CDS
T06106
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107439069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107439069
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107439069
U7-dependent histone pre-mRNA processing factors
107439069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Myosin_N
Motif
Other DBs
NCBI-GeneID:
107439069
NCBI-ProteinID:
XP_042903217
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Position
10:1742817..1774961
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AA seq
755 aa
AA seq
DB search
MTSIIKLLPLSGVYSEDPHCYLLQVDEFKFLLDCGWDENFNMTHIKELKKHIHQIDAVLL
SYPDILHLGALPYVVGKCNLDCPIYATVPVYKMGQMFMYDLFQSRHNTEEFTLFTLDDVD
AAFDKIIQLKYNQSINLKGKGQGIAITPLPGGHMIGGAIWRIVKDGEEDIVYAVDFNHKK
ERHLNGCVLESITRPSLLITDSYNSTYIQPRRRFRDEQLMTNVLQTLRNDGNVMISVDTA
GRVLELAHMMDQLWRSQDSGLMAYSLALLNNVSYNVVEFAKSQVEWMSDKILRSFEGGQK
SNPFQFKHLQLCHSLGELNKVPEPKVVLASMPGMECGFSRELFIQWCGNPKNSIILTSRS
LPNTLARTLIDFPEQRTVELQIRKRVRLEGSELEEYLKKEKEKELEAARQRSERDAEFGG
SDSSEEDEDELEVDRGGSARHDLMMKIEGKQRGGGFFKQARKSYPMYPLKEEKIKWDDYG
EIIKLEDYMILEPSNLEEENKENKIENDDLVQDITEVPTKCVALMQTLDIKSSVQYIDFE
GRSDSESIKKILSMIKPRRLIIVRGTPESTEALVNYCVSGAVPGKVFTPHLLEIVDATTE
SHIYQVKLKDSLVSSLDFVKSKDDVELAWVDGEIIMEEEADKIVMNNTENPEEDEETEDT
KRSESEIEKIPVLQPLPTSQISGHPTLFVNEVLLSDFKQVLMRNGINAEFAGGVLYCNDV
VALKRNESGHIDFEGVLTEDYFRVRELLYEQYAII
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaattatcaaattacttcctttgtctggagtttatagtgaagatccacattgt
tacttgttacaagtggacgagttcaaatttttgcttgattgtggatgggatgaaaatttt
aatatgactcatattaaggaattaaaaaagcatattcaccaaatagatgcagtgttgtta
tcctacccagatattttgcatctgggtgccctaccttatgttgttggaaagtgtaatttg
gattgtcctatttatgctactgttcctgtttataaaatgggacagatgtttatgtatgac
ttatttcagtctcgtcataatactgaagagttcaccctttttaccctggatgatgttgat
gcagcttttgataaaataatacaactgaaatataatcagtctatcaatttgaaaggtaag
ggacaaggcattgcgataactcctctacctggtggacacatgataggtggtgccatctgg
cgaatagtcaaagacggtgaagaagacattgtatatgctgttgattttaatcacaaaaaa
gaaaggcatctgaatggctgtgtgttagaatccatcactcgaccatctttactcattaca
gattcttacaactctacctacattcagccacggaggaggtttagagatgaacaactcatg
acgaatgttctccaaactttaagaaatgatggtaatgttatgatatcagtagatacagct
ggaagagttctggagttagctcacatgatggatcagttgtggagaagccaagattctggg
ttgatggcatactcattagcactattaaataatgtcagctacaatgttgttgaatttgca
aaatctcaggttgaatggatgagtgataaaattttacgttcatttgagggtggacagaaa
agcaaccctttccagtttaaacatctacagctatgtcatagtcttggagagctaaataaa
gtacctgaaccaaaggttgttttggcaagcatgcctggaatggaatgtggtttttctcga
gaattatttatccagtggtgtggaaatcctaaaaatagtatcattctcacctccaggagt
ttgccaaatacgttggccaggactcttattgactttccagaacaaagaaccgtagaactc
cagattagaaaacgagtccgccttgaaggttctgagttagaagaatatttaaaaaaagaa
aaggaaaaggagttagaagccgccagacagcgaagtgagagagatgccgaatttggaggt
tcagattcgagcgaggaagacgaagatgaactggaggtagacagaggcggtagcgccaga
cacgacctcatgatgaaaatagaagggaagcaaaggggtggaggttttttcaaacaagcc
agaaagtcttatcccatgtatcctctgaaggaagaaaaaattaaatgggatgactatgga
gaaattataaaacttgaggactatatgattttagaaccgtcaaatcttgaagaagaaaac
aaagaaaataaaatagaaaatgatgacttagtacaagatattacagaagtcccaacaaag
tgtgttgccctaatgcagacactggatataaaatcttctgtacagtatatagattttgag
ggtcgatcagacagtgagtccattaaaaaaattctcagtatgattaaacctagaaggctg
ataatcgtcagagggactcccgagtctaccgaagccttggtcaattattgcgtttccggg
gctgtgcccggaaaagtgttcacgccccatttgctagagattgttgatgcaaccacggaa
agtcatatttatcaggtcaaactgaaagattctctggttagttcgttagattttgttaag
tccaaagacgatgttgaacttgcttgggtggatggagaaatcataatggaggaggaggct
gacaaaatagttatgaataacactgagaatccagaagaagatgaagaaacagaagataca
aaaagaagtgaaagtgaaatagaaaaaataccagttctgcagcctttacctacaagtcag
atatctggtcaccccaccctatttgtcaatgaagtactgctttctgattttaagcaagtt
ttgatgagaaacggtataaatgctgagtttgctggtggagtattgtactgtaatgatgtt
gttgctttaaaaaggaatgaatctggtcatattgattttgagggagtcctaacagaagat
tatttcagagtccgagaattattgtacgaacagtacgcaattatatag
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