Parasteatoda tepidariorum (common house spider): 107441024
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Entry
107441024 CDS
T06106
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03013
Nucleocytoplasmic transport
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107441024
03015 mRNA surveillance pathway
107441024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107441024
Enzymes [BR:
ptep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107441024
5.6.2.5 RNA 5'-3' helicase
107441024
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107441024
mRNA cycle factors
Common to processing body (P body) and stress granule
107441024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
DEAD
AAA_16
Helicase_RecD
nSTAND3
SRP54
ATPase
AAA_22
AAA_32
Motif
Other DBs
NCBI-GeneID:
107441024
NCBI-ProteinID:
XP_042896769
LinkDB
All DBs
Position
7:7770291..7807450
Genome browser
AA seq
1116 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDPDEGNDLLGADTQGSDFEFTDFSLASQTQASQIDQNQSQASRS
QLNGPDLSLTNGLDRDVCSTTQTIGELNFQEDEEDQYYTKDLPEHACKYCGIHDPSCVVQ
CNVCKRWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGCRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDPDQWKPLISDRSFLAWLVKVPQEQEQLRARQ
VSAAQINKLEELWKDNVDASFEDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADY
DKKLKESQTQDNIEVRWDIGLNKKIISYFTIAKSDTDMRLMHGDELRLRYLGELHKPWSG
VGHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDETS
VSAYIYHKLLGHEVEDVTMRNQLPKHFSAPNLPELNRSQVYAVKHAMQRPLSLIQGPPGT
GKTVTSATIVYHLVRQNNGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAINSPV
SFLALHNQIRNLEGHSELHKLQQLKDETGELSSADEKRYRMLKKACEKELLEAADVICCT
CVGAGDPRLARFKFYSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVYAEERKMKGVD
FPWPQPDKPMFFYACQGQEEIAGSGTSYLNRTEAALVERLTTRFLKCSVKPEQIGIITPY
EGQRAYLVQYMQYNGSLHAKLYQDIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQTLWNHLLTFYKENKVLVEGPLNNLKESLIQFSKP
RKLTNTVNPGSHFMNTAMYDAREAMIPGSVYDRSSHLNGGPAFYNRPHDQLSYISPERAQ
GTVANLPVPVGMFLNMAHIPPRFYNQHQQALQARQNQRNRNATRKGGGRQANGRAVSNGQ
LNLSQTGFNSQASQDMMGGFSQGPLTQGQLSMSQMSQPNYPGLSQPGLSQPELSQDTYLV
DDMRSQTEGMLSQDSTYQGDRAYFAASQGGQFSQPY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcatacgggcctagttctcagactttaacatttcttgatccagatgaa
ggaaacgatctgttaggagcagatacccaagggtcggacttcgaatttacagacttttcc
ttagcatctcaaacacaagcatcacaaattgaccaaaatcaaagtcaagcatcaagaagt
cagttgaatggcccagatttatcacttacaaatggcttagaccgtgatgtttgttctact
actcagacaataggagagttgaattttcaagaagatgaagaagatcaatattacactaaa
gatttacctgaacatgcttgcaagtattgtggaattcatgatcccagttgtgttgtgcag
tgcaatgtttgcaagagatggttttgtaatggacgaggtaatacttcagggagtcacata
ataaaccatcttgttcgtgcaaaacacaaagaagttactcttcataaggatggccccctt
ggtgaaactatcctagagtgctacagctgtggttgtagaaatgtatttgtcctcgggttt
attcccgccaaagcagattctgttgtagttttactttgcagacaaccctgtgcagcgcaa
agcagtttaaaagatatgaattgggatcctgaccagtggaaaccacttataagtgatcgc
agtttcttagcatggttagtaaaagtaccacaggaacaagaacagttacgtgcaaggcag
gttagtgcagcacaaattaataagctggaagagttgtggaaggataatgtggacgcctct
tttgaggatcttgaaaagcctggagttgatgaggaaccacaacaagtacttttaaggtat
gaagatgggtaccaataccagaatatatttggacctttagtgaaaatggaagcagattat
gataagaaattgaaagaatctcaaacccaagataatattgaagtccgatgggatattggt
cttaataaaaaaataataagctatttcactattgctaagtcagatacagatatgcgcctg
atgcacggagatgaactgagacttcgttatctcggagaacttcacaagccatggtctggc
gttggacatgttattaagattccagacaactacagtgaagaagttggaatagaaatgaaa
accaatttaggtgtaccatctgagtgcacttctaactttgtggtggatttcgtttggaaa
tcaacttcctttgacagaatgcaggcagctttgaggaaatttgctgttgatgaaactagt
gtctctgcttatatctatcacaagctgttgggtcatgaagtggaagacgtgaccatgaga
aatcaattgccaaaacatttctctgctccaaatcttccagaactcaatcgatctcaagtc
tatgctgtaaagcatgccatgcaaagacccttgtctttgattcagggtcctccaggaact
ggcaaaacggttacttcagctactatagtttaccacctggttcgccaaaataatggacct
gttttagtgtgtgctccaagtaatattgctgttgatcagctaacagaaaaaatccatagg
actggtttaaaggttgttcggttatgtgccaagagtcgtgaagccattaattctcctgta
tcctttcttgccttgcacaatcaaatcagaaatttggaaggtcattccgaattgcataaa
ttacaacaactcaaggatgaaacgggtgagctatcctctgctgatgagaaacgatatagg
atgttgaagaaagcctgcgaaaaagaacttttagaggctgctgatgtgatatgctgcacg
tgtgtcggagcaggtgaccctagacttgccaggttcaagttttattccatattaatagat
gaaagcatgcaagctactgaacctgaatgtatggtgcctgttgttttaggtgccaaacag
ctgatactagtgggtgatcattgtcagctgggacctgttgtcatgtgtaaaaaagctgca
agagctggtctctcacaatccttgtttgagagattggttgttctgggaataaggcctctg
aggctggaggtgcaatacagaatgcatcctcaacttagcaagtttccatccaactttttc
tatgaaggttctcttcaaaatggagtttatgcagaggagagaaaaatgaaaggtgttgat
ttcccgtggccgcagccggataaacccatgtttttctatgcctgccaaggtcaagaagaa
attgcgggctctggcacatcttatcttaatagaactgaagccgctttggtggaaagactt
acgacaaggttcctgaaatgcagtgttaaaccagagcaaattggtattatcacaccatat
gaaggtcaaagagcatatttagtgcaatatatgcagtataatggttcattacatgcaaaa
ctgtatcaggacatagaagttgcgagtgtggacgcgtttcaagggagagagaaagattta
atcattatgtcatgcgtacgttcgaatgaacatcagggcattggtttcttgaacgatcca
aggcgcttgaacgttgctttaacaagagctaggtatggaataattattgttggcaaccct
aaagttttatccaagcaaactttgtggaatcacttattaacattttacaaagaaaacaaa
gttttggttgaagggccattaaataatttaaaggaaagcttaatacagtttagcaaaccg
aggaagcttaccaacacagtgaacccgggatcccatttcatgaatactgccatgtacgat
gcaagagaagccatgattccaggcagtgtgtatgatagatcatctcacctaaatggaggt
ccagcattttacaatcgaccacacgatcaactctcctacattagtccagaaagagctcag
ggtaccgttgctaatttgcctgttcctgttgggatgttcttgaacatggctcacattcct
ccacgtttctacaatcaacatcaacaagctcttcaagctcgtcaaaaccaaaggaatcgt
aatgccacaagaaaaggtggaggcagacaagcaaatggtagagcagtctccaatgggcaa
cttaacctttcccagactggatttaacagccaagctagccaagacatgatgggtggattt
tctcaaggtcctcttacgcaaggacagttgagcatgagtcagatgagccagcccaattat
ccaggactctctcagcctggtttatcacagccagagttgtctcaggacacctacctggtg
gatgatatgcgttcccagacagaagggatgctctcacaagactctacataccaaggagat
agggcctactttgctgcatctcaaggtggccaattctcacaaccctattga
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integrated database retrieval system
