Parasteatoda tepidariorum (common house spider): 107441188
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Entry
107441188 CDS
T06106
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep04382
Cornified envelope formation
ptep04512
ECM-receptor interaction
ptep04518
Integrin signaling
ptep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107441188
04518 Integrin signaling
107441188
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107441188
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107441188
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptep04147
]
107441188
00536 Glycosaminoglycan binding proteins [BR:
ptep00536
]
107441188
Exosome [BR:
ptep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107441188
Glycosaminoglycan binding proteins [BR:
ptep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107441188
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107441188
NCBI-ProteinID:
XP_042907550
LinkDB
All DBs
Position
4:complement(26663912..26736842)
Genome browser
AA seq
1758 aa
AA seq
DB search
MISRWIITFCLVHLFFLRSSESAACKGCVTQPCICTGDKGPFGSPGIPGLQGPPGHPGSI
GPEGPPGKRGNKGDIGYPGADGPKGIRGEDGMPGFEGTPGVPGLPGSDGPPGERGFPGCN
GTDGRPGPPGIPGRLGPKGRDGNPGYWGQKGDPGEGGINSLGIRGEPGEPGRPGFPGPIG
YPGSRGANGITGDSGPPGVQGYPGDKGGRGPTGEGVRGQKGQKGETGQTGDIGKPGIPEA
VKPEDELTGSPGESGDRGDKGDDGVRGYDGRPGNQGPKGQKGPDGDKGERGELGPRGKRG
RTGFPGPSGERGQKGNPGLTGREGKPGFKGMQGQLGTAGPPGPQGYEGPPGEFIEFGKPL
PGPPGSQGEPGDPGYPGVQGAPGRQGPVGFRGQPGPPGEAGQLGETGPHGMSFKGEPGED
GINGLPGMSGSPGFPGLQGPLGSKGEPGITVRGPAGQRGRPGFDGNSGLPGPVGDSGPKG
DKGYPGYGRNIVGPPGPPGPSGLPGPSGDVGLPGRDGFPGAVGEKGDDCGRCSAGYPGVK
GDRGADGRPGQVGPHGYPGYRGLPGEKGTPGYPGAPGFKGARGLGGIDGSEGFPGETGDP
GDLILPPGTKGKKGLTGDDGDRGFPGSDGISGSPGLRGFPGFPGRKGEPGDDGDPGFQGR
DGPPGLVGPSGPKGEAGDFSYGLPGRKGEQGYEGLTGFLGSKGKKGDQGDSFDVRNITWA
KGYVGPPGERGSPGPPGRPGKEGPSGKDGTPGYPGQRGFKGDAGFPGPNLRGETGNKGYP
GVPGNAGLDGPPGPKGSPGPGGQYGLPGTKGDQGEPGEDGFQGFPGSPGFPGRKGEIGDP
GYVGRIGLPGPVGSPGPQGLKGLPGIPGLYGADGAKGEPGDSGPGTKGDRGFPGSPGLTG
LPGGKGDRGLVGQPGSRGFKGERGEAGFDGERGPQGIEGLPGPDGRPGKRGFDGRPGFPG
EKGEPGIPGNGGPAGPSGRRGFSGLKGLIGDVGEQGLPGRPGSFGLRGEIGDPGYPGNPG
PKGEPSTYSQKGEPGETGIPGAKGSKGYAGLSGLQGRKGEQGRPGFVYPGAEAAKGTQGP
KGYPGPPGFLGPKGIAGLPGRPGPPGMKGDYGIPGLSGLQGPPGLTGLPGFKGEAGDLGR
YGPPGIKGDRGLEGLPGLSGSKGGFGYPGLPGISGLPGPKGLRGNPGPKGIPSYELNKGA
KGDSGIPGIPGIPGQKGESGLSGYPGIKGERGDQGFPGRDGIPGVIGLKGEPGRIGETGD
GGTPGFPGSKGEEGDGGIPGFPGTPGLSGRKGEPGTPGRMGNPGRKGEAGYSFPGRKGEK
GPDGLPGPPGLGGLQGARGDRGEPGYPGNSGIQGDRGLPGRAQPGPSGPPGLQGRDGFPG
LAGAKGNTGFPGRPGFSGPKGIQGDVGFRGAIGPTGPKGFPGNPGPRGDAVPENEIFPIP
GFPGDNGLAGLPGLSGERGAMGDPGRDGLSGPKGSPGYPGVNGYPGPQGFKGTIGDRGLD
GFSGFPGTTGLIGNQGEPGYPGTPAPSRGFFYTRHSQTTQVPDCPGGTSVMWDGYSLLYI
QGNEKAHGQDLGSPGSCLRKFSTMPYMFCNINNVCHMASRSDFSYWLSTSESMPMDMAPI
TGRNIKRYVSRCSVCESSTQVIAVHSQSIEIPDCPYGWDGLWEGYSFFMNTDSGAEGSGQ
PLSSPGSCLEEFRPNPFIECQGLGRCNYYTTAYSFWLAVVHQHRQFNIPEPKTLKAGDLL
TSISRCRVCRRIPFHGTL
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgatttctaggtggataattactttttgtttagtgcacctattctttttaagatcgtca
gaatcggcagcatgtaaaggatgcgtaacgcagccatgtatttgcacaggagacaaaggc
ccattcggttcaccagggataccaggactgcaaggtccaccaggtcatcctggttccata
gggccagaaggacctcctggaaaaagaggaaataaaggagacattggatatccaggagct
gatggtcctaaaggcattagaggagaagatggcatgccaggctttgaaggtacaccagga
gtacctggcttacctggaagtgatggaccacccggagaacgtggttttccaggttgtaat
ggaactgatggtcgcccagggccaccaggtataccaggcagactaggtcccaagggtcga
gatggaaatcctggatactggggacaaaaaggagatcctggagaaggaggaataaactct
ctaggcattagaggtgaaccaggagaaccaggaagaccaggatttccgggacctattgga
tatccaggatcacgcggtgctaatggaataacaggagattcaggaccccctggtgtccaa
ggttatcctggagacaaaggtggacgtggtccaacaggagagggtgtacggggtcaaaaa
ggacagaaaggtgaaacaggtcaaacaggagatattggcaaaccaggaattccagaagct
gtaaaacctgaagatgaacttacaggatcacccggtgaatccggagaccgaggagataaa
ggtgatgatggtgttcgtggctatgatggcaggcctggcaatcagggtccgaagggacag
aaaggccctgatggagacaagggtgaaagaggagaattgggaccaaggggaaagaggggt
agaactggattccctggaccttctggtgaaaggggacaaaaaggtaatccaggtttgaca
ggcagagaaggaaaaccaggattcaagggaatgcaaggacaactaggcacagctggaccc
ccaggtcctcaaggttacgaagggccccctggagaattcattgaattcggtaaaccactt
ccgggaccaccaggaagccaaggagaaccaggggatcctggttatccaggtgttcaaggt
gcacctggaagacaaggaccagtaggatttagaggacaaccaggaccaccaggagaagct
ggtcaactcggcgaaaccggaccacatggcatgagttttaaaggagaaccaggagaagat
ggaataaatggtctccctggaatgtctggttcaccaggtttcccaggtttacaaggaccg
ctaggatcaaaaggagagcctggaatcacagttaggggaccagcagggcagagaggacgt
ccgggttttgatggaaattctggtttaccaggtcctgttggagactctggaccaaaagga
gataaagggtatcccggttatggtcggaatatagtgggcccacctggtcctcctggtcct
tcaggattgccagggccatcaggagacgtgggactacctggtcgagatgggtttcctggg
gctgtaggggagaagggtgatgactgtggcagatgctcggctggataccctggtgttaaa
ggagacagaggtgctgatggaagaccaggtcaagtgggaccacatggctatcctggttat
cgtggtttgccaggtgaaaagggtacaccaggatatcctggtgctcctggtttcaaaggc
gccaggggcttaggaggtatcgatggctctgaaggttttcctggagaaaccggtgatcca
ggtgatctgatattgcctcctggaaccaaagggaagaaaggactgacaggagatgatggt
gatcgtggttttcccggatcagatggtatttcgggatcacctggacttagaggatttccg
ggatttcctggaaggaaaggagaaccaggtgacgatggagatcctggatttcaaggcaga
gatggaccaccaggattagttgggccatcaggaccaaaaggggaagctggagatttctca
tacgggcttccaggaagaaaaggagaacaaggctatgagggacttactggttttctggga
tcgaaaggaaaaaaaggtgaccagggtgattcatttgatgtcagaaacataacttgggca
aaaggatacgttggacctcccggagaaagaggatctcctggaccccctggaagacccgga
aaagaaggtccatcaggtaaagatggaacccctggttatcccggacagaggggttttaaa
ggcgacgctggtttccctggcccaaatctcagaggtgaaacaggtaacaaaggctatcca
ggtgttccaggaaatgcgggattagatggacctccaggacctaaaggatcaccaggacca
ggagggcagtatggattacctggtacaaaaggagatcaaggtgagccaggtgaagacgga
ttccaagggtttccgggaagccctggttttcctggtcgaaaaggtgaaattggtgacccg
ggttatgtgggacgtatcggactacctggtccagttggatcaccaggacctcaagggcta
aaaggtcttcctggcattcctggattatatggtgcagatggtgcaaaaggtgaaccagga
gattcagggccaggaactaaaggggaccgaggctttccaggttcacccggacttactgga
ttaccaggaggcaaaggagatagaggtttagtaggtcaaccgggtagtagaggattcaaa
ggagaaagaggtgaggcgggttttgatggcgaaaggggacctcaaggaattgaaggattg
cctggaccagatggtaggccagggaaaagaggattcgatggtagaccaggttttccggga
gaaaagggtgagcctggaattccgggtaatggtggaccagcaggaccatcgggaagaaga
ggattttcgggtttaaaaggtctgattggtgacgttggtgaacaaggcttaccagggcgg
ccaggatcatttggacttcgtggggaaataggagatcctggatatcctggaaacccagga
cctaaaggagagccctcaacatatagtcaaaaaggagaaccaggagaaactggaatacca
ggcgcaaaaggttctaaaggatatgccggtctctcagggttgcaaggacgtaaaggggag
caaggacgtcctggctttgtatatccaggagcagaagctgctaagggaacccaaggacct
aagggttaccctggtccaccaggatttctaggacctaaaggaatagcgggactccctgga
aggccaggtccacctggaatgaaaggggattatggaatacccggtctttctggtctgcaa
ggaccccctggactcacgggacttccgggatttaaaggtgaagctggtgatttaggtaga
tacgggccacccggaataaagggtgacagaggattggaaggcttgcctggactttctgga
tcaaaaggagggtttggatatcctgggcttccaggaatttctggtctaccaggaccaaaa
gggctaagaggcaaccctggtccaaaaggtattccttcatatgaactaaataaaggcgca
aaaggtgattctggaatccctggtataccaggtattccaggacagaaaggtgaaagtggc
ttgtctggatatcctggaataaaaggcgaaagaggagatcaaggatttcctggacgagat
ggcattcctggagttattggattaaaaggtgaaccgggcagaattggagaaactggagat
ggtggaacaccaggattcccaggttcaaagggtgaagaaggcgatggtggaataccaggt
tttccaggaacacctggattatcgggaagaaaaggagaacctggaactccgggaagaatg
ggcaatcctggacgcaaaggtgaagcaggttattcatttccaggaagaaaaggcgaaaaa
ggcccagatggacttccaggacccccaggattgggtggattgcaaggtgccagaggagat
aggggagaacctggttaccctggaaattctggtatacaaggagatagaggtttaccaggt
agagctcaacctggaccttcgggaccacctggtttacagggtagagatggctttcctgga
ttagctggtgcaaaaggcaacacaggatttcccggacgccccggattttcaggccctaaa
ggaattcaaggagatgtgggcttccgtggagcaatcggtccaactggaccaaaaggattt
cctggtaatccgggtccacgtggagatgcagtaccagagaatgaaattttccctatccca
ggattccctggagataatggtttagctggtcttccaggcctttctggtgaaagaggtgcg
atgggtgatcctggtagagatggattatccggacccaaaggaagtcctggatatcctgga
gtaaatggatatccgggaccacagggttttaaaggaacaattggagacagaggtcttgat
ggttttagtggtttccccggtactacaggcttaataggaaatcaaggggaaccaggatac
ccaggcacaccagctccatctagaggattcttctacacacgacatagtcaaacaactcaa
gtaccagattgcccaggtggtacttctgtgatgtgggatggatattccttactttacatt
caaggaaacgaaaaagctcacggacaagatttgggaagccctggtagttgtttgaggaag
ttcagtacaatgccatacatgttctgcaatataaacaatgtatgccacatggcttcacgc
agtgacttcagctattggttaagcacttcggaaagtatgccaatggatatggcacccata
acaggtagaaacataaagagatatgtcagtagatgctctgtgtgtgaatcttccactcaa
gtaatagccgtccatagtcaaagtattgaaatcccagattgcccatatggatgggacgga
ctttgggaaggttacagctttttcatgaacaccgactcaggagcagaaggtagtggacaa
cctttgtcttctccaggatcttgcttggaagaattccgacctaatcccttcattgaatgc
caaggattgggtagatgcaactattacaccactgcttacagcttctggttagcagttgtt
catcaacacaggcaatttaacattcctgaacctaaaacactgaaggctggtgatttattg
actagtatttcaaggtgcagagtctgtagacgaatacccttccatggtactttataa
DBGET
integrated database retrieval system
