Parasteatoda tepidariorum (common house spider): 107441188
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Entry
107441188 CDS
T06106
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep04512
ECM-receptor interaction
ptep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107441188
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107441188
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptep04147
]
107441188
00536 Glycosaminoglycan binding proteins [BR:
ptep00536
]
107441188
Exosome [BR:
ptep04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107441188
Glycosaminoglycan binding proteins [BR:
ptep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107441188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107441188
NCBI-ProteinID:
XP_042907550
LinkDB
All DBs
Position
4:complement(26663912..26736842)
Genome browser
AA seq
1758 aa
AA seq
DB search
MISRWIITFCLVHLFFLRSSESAACKGCVTQPCICTGDKGPFGSPGIPGLQGPPGHPGSI
GPEGPPGKRGNKGDIGYPGADGPKGIRGEDGMPGFEGTPGVPGLPGSDGPPGERGFPGCN
GTDGRPGPPGIPGRLGPKGRDGNPGYWGQKGDPGEGGINSLGIRGEPGEPGRPGFPGPIG
YPGSRGANGITGDSGPPGVQGYPGDKGGRGPTGEGVRGQKGQKGETGQTGDIGKPGIPEA
VKPEDELTGSPGESGDRGDKGDDGVRGYDGRPGNQGPKGQKGPDGDKGERGELGPRGKRG
RTGFPGPSGERGQKGNPGLTGREGKPGFKGMQGQLGTAGPPGPQGYEGPPGEFIEFGKPL
PGPPGSQGEPGDPGYPGVQGAPGRQGPVGFRGQPGPPGEAGQLGETGPHGMSFKGEPGED
GINGLPGMSGSPGFPGLQGPLGSKGEPGITVRGPAGQRGRPGFDGNSGLPGPVGDSGPKG
DKGYPGYGRNIVGPPGPPGPSGLPGPSGDVGLPGRDGFPGAVGEKGDDCGRCSAGYPGVK
GDRGADGRPGQVGPHGYPGYRGLPGEKGTPGYPGAPGFKGARGLGGIDGSEGFPGETGDP
GDLILPPGTKGKKGLTGDDGDRGFPGSDGISGSPGLRGFPGFPGRKGEPGDDGDPGFQGR
DGPPGLVGPSGPKGEAGDFSYGLPGRKGEQGYEGLTGFLGSKGKKGDQGDSFDVRNITWA
KGYVGPPGERGSPGPPGRPGKEGPSGKDGTPGYPGQRGFKGDAGFPGPNLRGETGNKGYP
GVPGNAGLDGPPGPKGSPGPGGQYGLPGTKGDQGEPGEDGFQGFPGSPGFPGRKGEIGDP
GYVGRIGLPGPVGSPGPQGLKGLPGIPGLYGADGAKGEPGDSGPGTKGDRGFPGSPGLTG
LPGGKGDRGLVGQPGSRGFKGERGEAGFDGERGPQGIEGLPGPDGRPGKRGFDGRPGFPG
EKGEPGIPGNGGPAGPSGRRGFSGLKGLIGDVGEQGLPGRPGSFGLRGEIGDPGYPGNPG
PKGEPSTYSQKGEPGETGIPGAKGSKGYAGLSGLQGRKGEQGRPGFVYPGAEAAKGTQGP
KGYPGPPGFLGPKGIAGLPGRPGPPGMKGDYGIPGLSGLQGPPGLTGLPGFKGEAGDLGR
YGPPGIKGDRGLEGLPGLSGSKGGFGYPGLPGISGLPGPKGLRGNPGPKGIPSYELNKGA
KGDSGIPGIPGIPGQKGESGLSGYPGIKGERGDQGFPGRDGIPGVIGLKGEPGRIGETGD
GGTPGFPGSKGEEGDGGIPGFPGTPGLSGRKGEPGTPGRMGNPGRKGEAGYSFPGRKGEK
GPDGLPGPPGLGGLQGARGDRGEPGYPGNSGIQGDRGLPGRAQPGPSGPPGLQGRDGFPG
LAGAKGNTGFPGRPGFSGPKGIQGDVGFRGAIGPTGPKGFPGNPGPRGDAVPENEIFPIP
GFPGDNGLAGLPGLSGERGAMGDPGRDGLSGPKGSPGYPGVNGYPGPQGFKGTIGDRGLD
GFSGFPGTTGLIGNQGEPGYPGTPAPSRGFFYTRHSQTTQVPDCPGGTSVMWDGYSLLYI
QGNEKAHGQDLGSPGSCLRKFSTMPYMFCNINNVCHMASRSDFSYWLSTSESMPMDMAPI
TGRNIKRYVSRCSVCESSTQVIAVHSQSIEIPDCPYGWDGLWEGYSFFMNTDSGAEGSGQ
PLSSPGSCLEEFRPNPFIECQGLGRCNYYTTAYSFWLAVVHQHRQFNIPEPKTLKAGDLL
TSISRCRVCRRIPFHGTL
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgatttctaggtggataattactttttgtttagtgcacctattctttttaagatcgtca
gaatcggcagcatgtaaaggatgcgtaacgcagccatgtatttgcacaggagacaaaggc
ccattcggttcaccagggataccaggactgcaaggtccaccaggtcatcctggttccata
gggccagaaggacctcctggaaaaagaggaaataaaggagacattggatatccaggagct
gatggtcctaaaggcattagaggagaagatggcatgccaggctttgaaggtacaccagga
gtacctggcttacctggaagtgatggaccacccggagaacgtggttttccaggttgtaat
ggaactgatggtcgcccagggccaccaggtataccaggcagactaggtcccaagggtcga
gatggaaatcctggatactggggacaaaaaggagatcctggagaaggaggaataaactct
ctaggcattagaggtgaaccaggagaaccaggaagaccaggatttccgggacctattgga
tatccaggatcacgcggtgctaatggaataacaggagattcaggaccccctggtgtccaa
ggttatcctggagacaaaggtggacgtggtccaacaggagagggtgtacggggtcaaaaa
ggacagaaaggtgaaacaggtcaaacaggagatattggcaaaccaggaattccagaagct
gtaaaacctgaagatgaacttacaggatcacccggtgaatccggagaccgaggagataaa
ggtgatgatggtgttcgtggctatgatggcaggcctggcaatcagggtccgaagggacag
aaaggccctgatggagacaagggtgaaagaggagaattgggaccaaggggaaagaggggt
agaactggattccctggaccttctggtgaaaggggacaaaaaggtaatccaggtttgaca
ggcagagaaggaaaaccaggattcaagggaatgcaaggacaactaggcacagctggaccc
ccaggtcctcaaggttacgaagggccccctggagaattcattgaattcggtaaaccactt
ccgggaccaccaggaagccaaggagaaccaggggatcctggttatccaggtgttcaaggt
gcacctggaagacaaggaccagtaggatttagaggacaaccaggaccaccaggagaagct
ggtcaactcggcgaaaccggaccacatggcatgagttttaaaggagaaccaggagaagat
ggaataaatggtctccctggaatgtctggttcaccaggtttcccaggtttacaaggaccg
ctaggatcaaaaggagagcctggaatcacagttaggggaccagcagggcagagaggacgt
ccgggttttgatggaaattctggtttaccaggtcctgttggagactctggaccaaaagga
gataaagggtatcccggttatggtcggaatatagtgggcccacctggtcctcctggtcct
tcaggattgccagggccatcaggagacgtgggactacctggtcgagatgggtttcctggg
gctgtaggggagaagggtgatgactgtggcagatgctcggctggataccctggtgttaaa
ggagacagaggtgctgatggaagaccaggtcaagtgggaccacatggctatcctggttat
cgtggtttgccaggtgaaaagggtacaccaggatatcctggtgctcctggtttcaaaggc
gccaggggcttaggaggtatcgatggctctgaaggttttcctggagaaaccggtgatcca
ggtgatctgatattgcctcctggaaccaaagggaagaaaggactgacaggagatgatggt
gatcgtggttttcccggatcagatggtatttcgggatcacctggacttagaggatttccg
ggatttcctggaaggaaaggagaaccaggtgacgatggagatcctggatttcaaggcaga
gatggaccaccaggattagttgggccatcaggaccaaaaggggaagctggagatttctca
tacgggcttccaggaagaaaaggagaacaaggctatgagggacttactggttttctggga
tcgaaaggaaaaaaaggtgaccagggtgattcatttgatgtcagaaacataacttgggca
aaaggatacgttggacctcccggagaaagaggatctcctggaccccctggaagacccgga
aaagaaggtccatcaggtaaagatggaacccctggttatcccggacagaggggttttaaa
ggcgacgctggtttccctggcccaaatctcagaggtgaaacaggtaacaaaggctatcca
ggtgttccaggaaatgcgggattagatggacctccaggacctaaaggatcaccaggacca
ggagggcagtatggattacctggtacaaaaggagatcaaggtgagccaggtgaagacgga
ttccaagggtttccgggaagccctggttttcctggtcgaaaaggtgaaattggtgacccg
ggttatgtgggacgtatcggactacctggtccagttggatcaccaggacctcaagggcta
aaaggtcttcctggcattcctggattatatggtgcagatggtgcaaaaggtgaaccagga
gattcagggccaggaactaaaggggaccgaggctttccaggttcacccggacttactgga
ttaccaggaggcaaaggagatagaggtttagtaggtcaaccgggtagtagaggattcaaa
ggagaaagaggtgaggcgggttttgatggcgaaaggggacctcaaggaattgaaggattg
cctggaccagatggtaggccagggaaaagaggattcgatggtagaccaggttttccggga
gaaaagggtgagcctggaattccgggtaatggtggaccagcaggaccatcgggaagaaga
ggattttcgggtttaaaaggtctgattggtgacgttggtgaacaaggcttaccagggcgg
ccaggatcatttggacttcgtggggaaataggagatcctggatatcctggaaacccagga
cctaaaggagagccctcaacatatagtcaaaaaggagaaccaggagaaactggaatacca
ggcgcaaaaggttctaaaggatatgccggtctctcagggttgcaaggacgtaaaggggag
caaggacgtcctggctttgtatatccaggagcagaagctgctaagggaacccaaggacct
aagggttaccctggtccaccaggatttctaggacctaaaggaatagcgggactccctgga
aggccaggtccacctggaatgaaaggggattatggaatacccggtctttctggtctgcaa
ggaccccctggactcacgggacttccgggatttaaaggtgaagctggtgatttaggtaga
tacgggccacccggaataaagggtgacagaggattggaaggcttgcctggactttctgga
tcaaaaggagggtttggatatcctgggcttccaggaatttctggtctaccaggaccaaaa
gggctaagaggcaaccctggtccaaaaggtattccttcatatgaactaaataaaggcgca
aaaggtgattctggaatccctggtataccaggtattccaggacagaaaggtgaaagtggc
ttgtctggatatcctggaataaaaggcgaaagaggagatcaaggatttcctggacgagat
ggcattcctggagttattggattaaaaggtgaaccgggcagaattggagaaactggagat
ggtggaacaccaggattcccaggttcaaagggtgaagaaggcgatggtggaataccaggt
tttccaggaacacctggattatcgggaagaaaaggagaacctggaactccgggaagaatg
ggcaatcctggacgcaaaggtgaagcaggttattcatttccaggaagaaaaggcgaaaaa
ggcccagatggacttccaggacccccaggattgggtggattgcaaggtgccagaggagat
aggggagaacctggttaccctggaaattctggtatacaaggagatagaggtttaccaggt
agagctcaacctggaccttcgggaccacctggtttacagggtagagatggctttcctgga
ttagctggtgcaaaaggcaacacaggatttcccggacgccccggattttcaggccctaaa
ggaattcaaggagatgtgggcttccgtggagcaatcggtccaactggaccaaaaggattt
cctggtaatccgggtccacgtggagatgcagtaccagagaatgaaattttccctatccca
ggattccctggagataatggtttagctggtcttccaggcctttctggtgaaagaggtgcg
atgggtgatcctggtagagatggattatccggacccaaaggaagtcctggatatcctgga
gtaaatggatatccgggaccacagggttttaaaggaacaattggagacagaggtcttgat
ggttttagtggtttccccggtactacaggcttaataggaaatcaaggggaaccaggatac
ccaggcacaccagctccatctagaggattcttctacacacgacatagtcaaacaactcaa
gtaccagattgcccaggtggtacttctgtgatgtgggatggatattccttactttacatt
caaggaaacgaaaaagctcacggacaagatttgggaagccctggtagttgtttgaggaag
ttcagtacaatgccatacatgttctgcaatataaacaatgtatgccacatggcttcacgc
agtgacttcagctattggttaagcacttcggaaagtatgccaatggatatggcacccata
acaggtagaaacataaagagatatgtcagtagatgctctgtgtgtgaatcttccactcaa
gtaatagccgtccatagtcaaagtattgaaatcccagattgcccatatggatgggacgga
ctttgggaaggttacagctttttcatgaacaccgactcaggagcagaaggtagtggacaa
cctttgtcttctccaggatcttgcttggaagaattccgacctaatcccttcattgaatgc
caaggattgggtagatgcaactattacaccactgcttacagcttctggttagcagttgtt
catcaacacaggcaatttaacattcctgaacctaaaacactgaaggctggtgatttattg
actagtatttcaaggtgcagagtctgtagacgaatacccttccatggtactttataa
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integrated database retrieval system
