Parasteatoda tepidariorum (common house spider): 107445605
Help
Entry
107445605 CDS
T06106
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107445605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107445605
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107445605
mRNA cycle factors
Common to processing body (P body) and stress granule
107445605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107445605
NCBI-ProteinID:
XP_042906132
LinkDB
All DBs
Position
3:complement(101685006..101748004)
Genome browser
AA seq
1003 aa
AA seq
DB search
MKASPSQIFKEAETLKASLLGESLSSSDNWQKRQELCHLLESLLLIDLDYALDKKVEQDL
WSFIFRNPISACQSKAREHKKSNHSYISSQLSTLLETASGFYLQLLQKLCCAYDIDLPCH
PRDSVYGLTKEWISSYPVAHQPRKTSLFYICQHCLVHLGDIARYRGQSLQAENFYRHAVD
LVPSNGQPYNQLALLEAASGEKLSTVFFYVRSLCVQHPFPLAATNLQNLFSKMSSDGSGP
EGKVRMSAFEYVSMFLQFHAVVHLNNDLKKTEPIINKLTSSLPALIIAEKFETWQLVQMI
TVCLFAIEHAWGTMDIDRNVTKFDETMLSLEELKAASLVEELLASMLHAFLLPVHASLEP
KETASYYTLPAIKIVLDWLLQDPQLLQHEAIAKNPQVWHGLCKLLNDLDVTTKETYDLKK
LEDIPLPEDWDLQAFLPLKKSQRRLKFSLNAATPSEEESTWLRSVRLCKLGECLAGVDKE
GKEGLNLLSLSQCEEGKRVFKAVHQTESLSEEVLQQIQELTINPSPSNSTNDAPALMNGS
ASILEVGSSSTSLRSKPTHNEMQQEVRFKLDDTPHQRKSETNNEKERHTKESNRRRQNVA
MQAILQQRAAQTSSSNHVRNQDTGKETNVLLHQETMNRQNARPQNHLDAAHVIRNIDNSA
IPQSVKEVNMNRPSLHHMVPPEQFNQFQAQTHPVGGVQPCERNDAWLQQFNIHQTGINSV
NRMTHDNSASVPNYVQNAMPRIIRAPGPNFNFQQQPPAQQSQPNQMLTKAVPAQANTFIT
NPPNVLWNYMGFVTPYQQAANPAQASAQIIVQQGTNPPSQPPPRQQPSFYLVNGAQQDLN
QLEAASNLLHAYRNASGGSLLQQQPPDMIRDQVQEHLAGRMWQQSMENGRNDMSTSHMGV
NQVVGRPVSQNLQSTLSAQQIQNANGSSALSHDLGSNTYSLFNSPWPPNMAAVSRQPSKE
GQHGNIEPLFMQSRIQSLWSGPGPSPLERLLEQQKQRRDGATQ
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcctcaccttcacaaatttttaaagaagctgagacactcaaagcttctttactg
ggtgagagcctatccagttcagacaattggcagaagcgacaagaattatgccacctgttg
gaatctctcctcctcatcgatctagattatgcccttgacaagaaagttgaacaagatctt
tggagtttcatattccgaaatcctatatcagcttgccagtcaaaggcgagggagcacaag
aagtctaaccacagctacattagcagccaactatctactttgttggaaactgcaagtgga
ttctatcttcaacttcttcaaaaattatgttgcgcatatgatatagacctaccttgtcac
cctagagactctgtttatggactgacaaaagaatggataagcagctatcctgtagctcac
cagcctcgaaaaacatcacttttttacatctgccaacattgccttgtccatttgggtgat
atagctcgatacaggggacagtctttgcaagctgaaaatttttatcgtcatgcagttgac
ttagttcctagcaatggtcaaccatacaaccagctggctttactagaagcagcaagtgga
gagaaactttcaaccgtctttttctatgtccgaagtttatgtgtgcaacatccattccct
ttagctgcaacaaacttacaaaatctgttctcaaaaatgtcttcagatggaagtggccca
gaaggaaaagtccgaatgtctgcctttgaatatgtctcaatgtttctgcaattccatgct
gttgttcatcttaataatgatctcaagaaaacagaaccaataattaataaattaacatct
tctctccctgcacttattattgctgaaaagtttgaaacgtggcagcttgtacaaatgata
actgtatgcttgtttgccattgagcatgcatggggaactatggatattgacagaaatgtg
actaagtttgatgagaccatgttaagccttgaggaacttaaagcagcctctttagttgag
gaattgttagcgagcatgcttcatgcatttttacttcctgtgcatgcctccctcgaaccc
aaagagactgcaagttactacacacttccagccatcaaaattgtacttgactggcttctg
caagatcctcaacttctgcagcatgaagccattgctaaaaatcctcaagtttggcatgga
ctttgtaaattgttgaatgatttggatgtgacaaccaaagaaacttatgatctcaagaag
ttggaagatattcctcttcctgaagattgggaccttcaggctttcttgcctttgaagaaa
tcacaaaggagacttaaattcagcttgaatgctgcaacgcccagcgaggaagagtctact
tggctccgttctgtgaggctctgcaaattgggagaatgtttggccggagtggacaaagaa
gggaaggaggggttgaatttattgtccctctctcagtgtgaggaaggaaaaagagtcttc
aaagcagttcatcaaactgaatctctctctgaagaagtgttgcaacaaattcaggagctg
acaatcaacccaagtccttcaaattccaccaatgatgctccagcattgatgaatggaagt
gcatccattttagaagtcgggagcagcagcacatccttgcgttcaaaacctacccacaat
gagatgcagcaagaggtgcgcttcaaactggatgacactcctcatcagaggaagtcagaa
acaaataatgagaaagagagacacactaaggaaagcaacagaagaaggcagaatgttgct
atgcaggctattctacagcaacgtgctgctcaaacttcatcttctaatcatgttcgaaat
caagatactgggaaagaaacaaatgtgttgcttcatcaagaaacaatgaatcgacaaaat
gctcgaccacaaaatcatttggatgctgcgcatgtcattcgtaacatcgacaacagtgcc
attccccaatctgtgaaagaggtgaatatgaatcgaccttctcttcaccatatggtgcct
cccgaacaatttaatcaatttcaagcccaaactcatcctgtgggaggtgttcaaccctgt
gaaagaaatgatgcatggctacaacaattcaacatccatcaaactgggatcaattctgtc
aatagaatgactcacgataacagcgcatccgttccaaactacgttcaaaatgccatgccg
agaattatcagagctccaggacccaattttaatttccaacagcagcccccagcccagcag
tcacagccgaaccaaatgctgacaaaagctgttcccgcccaggccaacacatttatcacc
aacccacccaatgtcttgtggaattacatgggattcgttacaccctaccaacaagctgct
aatcctgctcaagctagtgctcagatcatcgttcaacagggcaccaatccaccttcacaa
cctccccctcgtcagcagcccagtttctacctcgtaaatggagcacaacaggacctgaat
cagctggaagcagcttctaatttgttgcatgcctataggaatgcttcagggggatctctc
ttgcagcaacagccacctgacatgatacgtgatcaggtacaagaacaccttgcgggccgt
atgtggcaacagagcatggagaacgggaggaacgatatgtcgaccagccacatgggtgtc
aatcaggttgttggtcgtcccgtatctcagaatttgcagagtacattatcagcgcagcag
attcagaatgccaatggatcttctgctctctcccatgacttaggttccaacacctactct
cttttcaactccccttggccaccaaacatggcagcagtctctcgacaaccctctaaagaa
ggtcagcatggcaacattgagccactgttcatgcagtccagaattcagtcgctgtggtcg
ggtcctgggccatctcccctggagcgcctactggaacaacagaagcagagacgtgatggt
gctacacagtga
DBGET
integrated database retrieval system
