Parasteatoda tepidariorum (common house spider): 107449781
Help
Entry
107449781 CDS
T06106
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107449781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107449781
03041 Spliceosome [BR:
ptep03041
]
107449781
03009 Ribosome biogenesis [BR:
ptep03009
]
107449781
03016 Transfer RNA biogenesis [BR:
ptep03016
]
107449781
Enzymes [BR:
ptep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107449781
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107449781
Spliceosome [BR:
ptep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107449781
Complex C
U4/U6.U5 tri-SnRNP related factors
107449781
Ribosome biogenesis [BR:
ptep03009
]
Eukaryotic type
Pre-60S particles
Helicases
107449781
Transfer RNA biogenesis [BR:
ptep03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107449781
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
nSTAND3
AbiGi
ATPase_2
AAA_22
Death_3
Motif
Other DBs
NCBI-GeneID:
107449781
NCBI-ProteinID:
XP_042906930
LinkDB
All DBs
Position
1:complement(2557785..2625440)
Genome browser
AA seq
1017 aa
AA seq
DB search
MDDNDDLFSVFDDESDKNTKKSDLVTVKTEKEPQIVCDFLKEIAEGKRIHEEESNVETKK
LKTNNILDTINLDEFSRIQIHVVETVEACLHEVAVPPDSDYMPLRQSQNPPSRNYPFLLD
PFQKEAILCLENNQSVLVSAHTSAGKTVVAEYAIATSLKNKQRVIYTTPIKALSNQKYRE
FFEEFKDVGLLTGDATINPSASCLIMTTEILRSMLYRGSEVMREVGWVIFDEIHYMRDKE
RGVVWEETIILLPDSVHYVFLSATIPNARQFAEWICYLHHQPCHVVYTDYRPVPLQQYIF
PAGGDGLHLVVDESGNFREENFNTAMNVLQVVGGASKGDSAMRGRKGGMKDGSNCYKIVK
MIMERNFAPVIVFSFSKKECEAYAMQMAKLDFNSAEEKPLVEEVFKNAMDVLSDEDKKLP
QVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKVILSFHSIPTHSPYILFKIIHK
ILFYSSTQLTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPSAGKDIVKGLPDPINSAF
HLTYNMVLNLLRVDEINPEYMLERSFFQFQNYSAIPQLYDRIRKLEENHDNILIKKEEEV
DTYYKIQKQLSALSAEYHSYIIQPEYCVPFFQPGRLVRVQNGEQDFGWGMIINYQKKSSE
NKQDSLVIYVVDVLLQVSKDSVDSKVTSSIKPVEKGEKGVMQVVPVKLDLIQQFSSVRAY
TPQDLRPLDNRMQVLKTIQTIQERFPDGLPLLDPVKDMKIKDQGFKDVLKKIEAFNLRLN
QHSLHNNPDVHDYISQYKRKAEIHSELKEAKAELKKAQSLLQMDELKCRKRVLRRMGYCT
ASDVIELKGRVACEISSADELILTEMIFNGVFNNLDVHQTTSLLSCFVFQEKSNEMPKLT
EELSGPLRLMQETARRIAKISKECKLELDSENYVESFRPHLMDVVSSWSKGASFLQISKM
TDVFEGSVIRCMRRLEELLRQMCQAAKAIGNTELEKKFSDGIKLIKRDIVFAASLYL
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatgacgatctgttcagtgtatttgacgatgagagtgacaaaaataccaaa
aagagtgatttagttacagtcaaaacagaaaaagaaccacaaattgtttgtgactttttg
aaagaaatagctgaaggcaaaaggatacacgaagaagaatccaatgttgagacaaaaaaa
ctgaagacaaataatattctagacactattaacctagatgaattttctagaattcaaatt
catgttgtggaaactgttgaagcatgtctacatgaggttgctgttcctcccgactcagat
tacatgccactgcgacaaagtcagaatcccccgtctcgcaactatccctttctgctagat
ccttttcaaaaagaagccatcctttgtttggagaataatcagtctgttcttgtatctgct
catacatctgcgggcaaaacagttgtagctgagtatgccatagccacatctctaaaaaac
aaacaaagggtgatttatacgactcccatcaaagctctaagtaatcagaagtatagagaa
ttttttgaagagtttaaagacgtaggattactgactggggacgctaccatcaacccttcg
gccagttgtttaattatgaccacagaaattttaagaagtatgctgtatcgcggctcggaa
gtgatgcgagaagtaggctgggttatatttgatgaaattcattatatgagagacaaagaa
cgaggtgtagtttgggaagaaacaattatattattacctgacagtgttcattatgtgttt
ctctctgctacaattcccaatgcaaggcagtttgctgaatggatttgctatttgcatcat
cagccctgtcatgttgtatacaccgactacagaccagttcctttgcaacagtatatattt
cctgctggcggtgatggtttgcatctagttgttgatgaaagtggaaatttccgtgaagag
aatttcaacacagccatgaatgttctgcaagtagtgggaggagcgtcaaagggtgattct
gcaatgagaggaagaaagggtggaatgaaagatggatccaactgctataaaattgttaag
atgataatggagcggaattttgctcccgtcattgtattcagttttagcaagaaagaatgt
gaagcatatgctatgcagatggctaagctagatttcaacagtgccgaagaaaagccgtta
gtggaagaagtgttcaagaatgccatggatgtgctatcagatgaagataaaaaattacct
caagttgaacatgtgttgccattgctgaaacgtggaattggtattcatcattctggcctt
ctacctattttgaaagaaactattgaaattcttttctctgaaggactcatcaaggtaatt
ctctcttttcattcaatccctacacactctccttatatattgttcaaaatcattcataaa
atacttttttattcatccacgcaactgacgtctggagaatacatccaaatgagtggaaga
gccgggagaagaggcctcgatgaaagaggtatcgtcatattaatggtggatgagaaaatg
agtccatctgctggaaaggacatcgttaagggtttgccagatccaatcaattcagcattc
cacctgacctacaacatggtgttgaatctgttgcgggtggacgaaataaatccagaatac
atgttggaacgttcattctttcaatttcagaactactccgctatcccacaactttatgac
agaatacggaaacttgaagagaatcatgataacatattaataaagaaagaagaggaagta
gacacttactataaaattcaaaaacagctgtctgcactttctgctgagtaccacagttac
atcattcaacctgaatattgtgttccgttcttccaacctgggaggcttgttagagttcaa
aacggtgagcaagatttcggatggggcatgatcattaactatcagaagaaatcttcggaa
aacaaacaagattctctggttatttatgttgttgatgtgttgcttcaagtttctaaagac
agtgtggattctaaagttacatcctccattaaacctgtggagaaaggagaaaaaggagta
atgcaggttgttcctgtaaaattagatctaatacaacagttcagctctgtgcgtgcctac
acccctcaagatcttagaccccttgataatcggatgcaagttttaaaaacaattcaaaca
attcaagaaagatttcctgatggtttgccacttcttgatcccgtgaaggacatgaaaata
aaagaccaaggctttaaagatgtgttgaaaaaaattgaagccttcaatttacgactgaat
cagcattcgctccataataacccagatgttcatgactacattagccagtacaagagaaag
gcagaaattcatagtgaattaaaagaagcaaaagcagagctgaagaaagctcaatcactc
ttgcaaatggatgaactaaaatgtcgaaagagagtattaaggaggatgggttattgtaca
gcatctgatgtcattgaacttaaaggacgtgttgcatgtgaaattagcagtgctgatgag
ctgatattgactgaaatgattttcaatggtgtgtttaataacctggacgtccatcagacc
acttccttactcagttgttttgtctttcaagaaaaatcaaatgaaatgccaaaactcaca
gaagaattgtctggacctctacgactcatgcaggaaactgcccgaaggatagctaaaata
agcaaagaatgcaagttggaattggattctgaaaattatgttgaatctttcagacctcat
ttgatggatgtagtcagttcatggagcaaaggagctagcttcttgcagatatcaaaaatg
acagatgtgtttgaaggaagtgtcatccgatgcatgaggagactggaagaattattgaga
cagatgtgtcaagcagctaaagcaattggaaacacagaattggaaaaaaagttttctgat
ggcataaaactcataaaaagagacattgtatttgcggctagcttatacctgtga
DBGET
integrated database retrieval system
