Parasteatoda tepidariorum (common house spider): 107451883
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Entry
107451883 CDS
T06106
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107451883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107451883
Enzymes [BR:
ptep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107451883
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107451883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
Motif
Other DBs
NCBI-GeneID:
107451883
NCBI-ProteinID:
XP_042907061
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Position
3:complement(4822679..4874104)
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AA seq
601 aa
AA seq
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MEITRNNFVETLPAVKEAIDWCDFLAIDTELTGLYSERSSEHAFDSMEERYAKLRKLCSE
FLIIQYGLSCFKYHPKLKKFTHRDFNFYIFPRPHIRQAPDHRFLCQTSSIHFLASHGYDF
NKTIYEGISYLRHDQEEKLKEFTNSKYKIQRDSISTPKKESSEANGQKEVEIPDEHKKFI
AEINERVNAFIENESETVLKLEPCSGYRRKLIYESVQQKYTSGIEMLSTVNDEKERFITI
TKMTDNAKIGKLDAKETSDMDDIDTAIGFRKVVEHISQSKKLVLGHHMYLDILHTIHKFF
YPLPESLQEYKEMLQLVFPNLIDTKHLASSDRVRPFLENTHLGDLFKSIQGKAFDLPEIE
TEVKFKGYELSCSNYHEAGFDAFITGVSLIGLTRKIASLQSKNAEQIDASCTFLKPFLNK
FYILRHYDIQSLNICGPDSEPDRENVFYVSFPKEWKTIDLVELFLPYGDIYVHWLDDVSA
LVALKNPENAISAKSGLLNKSSKMYRVQTYADYRKWENQQISTKKVEIKKPATSSSSKVS
QAKRSFKNDTSNSSMDLIPEIDENEAEGAPSGNPPAKKLKKSVDDPESGEVTSTFEEDNN
W
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaccagaaacaattttgttgaaacattgcctgctgtgaaagaagctatagat
tggtgtgattttttagctatagacactgagttaactggtctctacagtgaacgctcatct
gaacatgcatttgacagcatggaggagagatatgcgaagcttcgcaagctttgttctgaa
tttttgataatccaatatggtctaagttgctttaaatatcatccaaaattaaagaaattt
actcacagagattttaacttttacatatttccccgcccacatatcaggcaagctccagat
caccgatttctgtgtcagacatcaagcattcattttctagcatcacatggatatgacttc
aataaaaccatttatgaaggcatttcatatttaaggcacgatcaagaggagaagttgaaa
gaattcaccaacagtaaatataagatacaacgggattcgatttcaactcctaagaaagaa
tcctctgaagcaaatggtcagaaagaagttgaaattccagatgagcacaaaaaattcatt
gcagaaattaatgaacgtgtgaatgcatttattgagaatgaatcagaaacagttctgaaa
ttggaaccttgtagtgggtatcgcaggaaactcatttatgaaagtgtccaacagaagtac
acaagtggaattgagatgttgtccacagtgaatgatgagaaagagagattcatcacaatc
accaaaatgactgataacgccaaaattggaaagctggatgctaaggaaacttctgacatg
gatgatattgacactgcaataggctttcgaaaagtcgttgaacacatatcacaatctaaa
aaactggttcttggtcatcatatgtatttggatatattgcatactatacataaattcttc
tatcctttacctgagtctttgcaagaatacaaggaaatgcttcaattggtatttccaaat
ttgatagatactaaacatttagcatcatccgatagagttaggccattccttgaaaataca
catttaggagatctttttaaaagtatccaaggcaaagcattcgacttacctgaaattgaa
actgaagtcaaatttaagggttatgaattatcctgtagcaattatcatgaagctggattt
gatgcttttatcactggagtaagcttaattggacttactaggaaaattgcttctttacag
tcgaaaaatgctgagcaaatagatgcatcctgtactttcttgaagccgttcttaaataaa
ttctatattctaaggcattatgacatccagtctttaaatatttgtggacctgactctgaa
cctgatagggagaatgtattttatgtaagcttccctaaagaatggaaaacaattgatctt
gttgagttgttcctgccatatggtgacatttatgtgcattggcttgatgatgtctctgct
ttagtagctctcaagaacccagaaaatgctataagcgccaaatctggattgttgaacaaa
agtagcaaaatgtatcgtgttcagacatatgctgattatagaaaatgggaaaatcaacaa
atctcaactaaaaaagttgaaatcaagaaacctgcgacatcatcatcatcaaaagtttct
caagcgaaaaggagcttcaaaaatgacactagcaattccagtatggatttgattccagaa
attgatgaaaatgaagcagaaggagcaccttctggtaatcctcctgcaaaaaagttgaag
aaatcagtggatgatcctgaatcgggtgaagtcacttccacttttgaagaagataacaat
tggtga
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