Parasteatoda tepidariorum (common house spider): 107453555
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Entry
107453555 CDS
T06106
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107453555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107453555
03041 Spliceosome [BR:
ptep03041
]
107453555
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107453555
Spliceosome [BR:
ptep03041
]
Complex B
Other components
Prp19-related factors
107453555
Complex C
107453555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_15
Mad3_BUB1_I
ARM_TT21_C
TPR_12
RPN7
ARM_TT21
SNAP
PPR
AbiH
DALR_1
Motif
Other DBs
NCBI-GeneID:
107453555
NCBI-ProteinID:
XP_042907949
LinkDB
All DBs
Position
10:complement(11228660..11261326)
Genome browser
AA seq
850 aa
AA seq
DB search
MKINVVNIVVDDDDVPYEEDILRNQFSVKAWLRYIDFKKEAPKNVINLLFERALKELPGS
YILWHRYLKLRRAQVRGLCVLDPAVEDVNSAFERALVFMHKMPRIWLDYCEFIMAQCNIT
RTRDVFDRSLRALPITQHHRIWPLYLKFVTKKAPPETAVRVYRRYLKLCYEDTEDFIDYL
AEIDRLDEASIKLAEVVNNERFVSKHGKPKHQLWNELCELISKNPEKVKSLNVDAIIRDG
LRRFSDQVGHFWNCLADYYIRSGLFDRARDIYEEAINTVMTVRDFTQGIFFFFKVFDAYS
QCEESLIKVKMEEIENGAVAAENVLHLDLLMERYDYLLERRPLLLNSVLLRQNPHNVHEW
HRRIKLLEGKPKEIISTYTEAVQKVDPKSACGKLHTLWVSFAKFYESHKQIDDARIIFEK
AIQVSYTEVDDLASVWCEWTEMEIRHNNFETALKLMHRATAAPVHKGSYHDQSLPVQERL
YKSLKVWLLYADLEEALGKFKSIKAVYDRIIDLRIATPQVIINYGLFLEENNYFEEAFKA
YEKGISLFKWPNVYDIWNTYLVKFLKRYGGTKLERARDLFEQCLERCPAEFAKSIYLLYA
KLEEEHGLARHAMSVYERATRAVLPKEQFEMFNIYLKKAAEIYGVTYTRQIYEKAIELLP
DSEAKQMCLKFADLEKKLGEIDRSRAIYAHCSQMCDPRTNQDFWRTWKEFEVRHGNEDTM
REMLRIKRSVQATYNTQVNFMNAQMLSAAVAAARIEVPEIEPNVMQNLEAQAQAISNTGE
PSLMSRGKVLFVRGETTEEEKAMIEEAQASNPAEIDLDFDSDEDEKIEEIQLEERQVPDE
VFGALKEKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaacgtcgttaatatagttgtggatgatgatgatgtcccatatgaagaggac
atacttagaaatcagttctcggttaaagcctggttgagatatattgatttcaaaaaagaa
gctcctaaaaatgtgattaatcttctatttgaaagggcattaaaagagctacctggaagc
tatatcctgtggcaccgttatttaaaacttcggcgtgcacaagtgcgtggtctatgtgtc
cttgatccagccgtagaagatgttaatagtgcatttgaaagagccttggtttttatgcac
aagatgccacgcatatggctggactactgtgaattcataatggctcagtgcaacataact
agaaccagagatgtttttgataggtcattgagagctcttcccattacacaacatcatcga
atatggccactttatcttaagtttgttactaaaaaggctccacctgaaacagctgtcaga
gtttatcgacgatatttaaagctatgttatgaagatactgaggatttcatagattattta
gcagaaattgatagactggatgaagcttcaattaagttggctgaagttgtcaacaacgaa
cgctttgtgtcgaagcatggtaaaccaaagcatcaactttggaatgagctgtgtgagcta
atatccaaaaacccagaaaaggtgaaatctcttaatgtagacgctatcatacgtgacggt
ttgagaagattttcggaccaagttggacatttctggaattgtcttgctgattattatatt
agaagtggcttgtttgacagggcacgtgatatttatgaagaagctatcaacacagtaatg
actgtgcgagatttcactcagggaattttttttttctttaaggtttttgatgcctattct
caatgtgaagaaagtctcataaaagtcaaaatggaagaaatagagaatggggctgtggct
gctgaaaatgtccttcatttagatttgctgatggaaaggtatgattatttgttagaaaga
agacctttattattaaacagtgttttattaagacaaaatcctcacaatgtccatgaatgg
cacagacgcataaagttactggaaggcaagcccaaagagattattagtacatatactgaa
gctgtacagaaggtagatccaaagtcggcttgtggaaaactgcatacattgtgggtatca
tttgctaaattctatgaatcccacaagcaaatagatgatgctcgtataatttttgaaaaa
gccatccaagtgtcttatactgaagttgacgatcttgcatcggtttggtgtgaatggaca
gaaatggaaattcgtcataataattttgaaactgctctgaagctgatgcatcgagccact
gctgcacctgttcataaaggatcgtatcatgatcaatctttgcccgtgcaagaaagactt
tacaaatctttaaaagtgtggctcctgtatgcagatttagaagaagctctaggaaagttt
aagtctattaaagcagtgtatgacagaatcattgatttgaggatagcaactcctcaagta
atcatcaattatggcttgtttcttgaagaaaacaattactttgaggaagcttttaaagct
tatgaaaaaggaatatcactcttcaaatggccaaatgtgtatgatatatggaatacatat
ttagtaaagtttttaaaacgttatggtggaactaaactagaaagagctcgagatttgttt
gaacaatgtcttgaaagatgtccagctgaatttgcaaaatcaatatatttactgtatgct
aaattagaagaagaacatggtctagcaaggcatgctatgtctgtctacgaacgagctact
agagccgttcttcctaaggagcagtttgagatgtttaacatatacttgaaaaaagcagct
gaaatatacggagtaacgtatacacgacagatttatgagaaagccatagagctattacca
gatagtgaagcaaagcagatgtgcttaaagtttgctgatttggagaagaaattaggcgaa
atcgatagaagtagagctatttatgctcactgcagccaaatgtgtgatccaagaactaac
caagacttttggaggacgtggaaagagtttgaggttcgtcatggtaatgaagacactatg
cgagaaatgttacgcatcaagcgtagtgtccaagcaacctataacacccaagtgaatttc
atgaatgcacaaatgttaagtgctgctgttgcagctgctcgcattgaagtccctgaaatt
gaacctaatgtgatgcaaaacttagaggctcaggctcaagctatttcaaatactggagag
ccatcattgatgagcagaggaaaggtgttgtttgttagaggtgaaacaactgaagaagag
aaggccatgattgaagaagctcaagcttccaatccagctgaaattgatctggattttgac
agtgatgaagatgaaaaaattgaagaaattcaattagaagagagacaggtaccagatgaa
gtatttggtgcactgaaagagaaagatgattag
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