Parasteatoda tepidariorum (common house spider): 107454345
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Entry
107454345 CDS
T06106
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107454345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107454345
Enzymes [BR:
ptep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107454345
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107454345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
ATP_bind_1
AAA_16
AAA_24
AAA_29
MMR_HSR1
AAA_22
AAA_15
Motif
Other DBs
NCBI-GeneID:
107454345
NCBI-ProteinID:
XP_015926999
LinkDB
All DBs
Position
3:38244153..38245787
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AA seq
414 aa
AA seq
DB search
MGENAVFKLEAENELRVMVGDQTQSVEIELIDGLAEIYGTEMQKNKVYAFPKSSSISVFS
WQGCSIKVTGAPQEAYIATDTYMILHVILHACLEQMRIAAENDNRKGPVTLVVGPADSGK
SSLCRLLLNYAARLGRKPFLIDLDVGQNSLSIPGTINILNVDKPADIVDGFDQEAIQAYH
FGYKSPGQMIALYFLQIKKLGEILQTRLRETNRNARTSGVIIDTCGWTRGDGYNALTLAA
MSFQIDKLVVVQEERLYTQLKRDMPSCVEVLYMPKMLGVNERTRPVRIHYREKRVKEYFY
GSTVELHPHTFEIHFSEIKIYQVTMKSPAPDSSVGVSLNDIGYSEVALGPQLINQVLALS
SADKMSDDAVLKNIIGFICVRDIDLVRGYITILSPQPAPLPKKILFLGDIELIM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgggggaaaatgctgtatttaaattagaagcggaaaatgaacttcgtgttatggttggt
gatcaaacacaaagtgttgagattgaactaattgatggccttgccgaaatctatggcacg
gagatgcagaaaaacaaagtttatgcatttccgaaatcttcatcaatatctgttttttca
tggcaaggttgttctataaaagtgacaggtgccccacaggaggcttatattgctactgat
acttacatgattcttcatgttatattacacgcttgtttggaacagatgcgaatagctgcg
gaaaacgataatcgcaagggacccgtcaccctagtagtaggtcctgcagattctggtaaa
agttctttatgtagactgctcttaaattatgcagccagactcggaagaaaaccatttcta
atagatttagatgttgggcagaattcgctttcgattccaggaacaataaatatacttaac
gtagataaaccagctgatattgttgatggttttgatcaagaagctatacaagcatatcat
tttggttataaaagtcctggacaaatgattgctttatattttcttcaaatcaaaaaatta
ggggaaatacttcaaacacgcttgagagaaactaataggaatgctcgaacatcaggcgtg
attattgatacttgtggttggaccagaggtgatggctataatgcgttaactctagctgct
atgtcatttcaaattgataaacttgttgttgtacaagaagaacgtttatatacacagctg
aaacgagacatgccgtcttgtgttgaagttctttatatgcctaaaatgctaggtgttaat
gaaagaactagaccagttcgtattcactatagagaaaaaagagtgaaagaatatttctat
ggttctactgttgaattacacccacacacttttgaaattcatttctccgagattaaaatt
taccaagttacaatgaaaagtcccgcaccagacagtagtgttggtgtttctcttaatgat
attggttatagtgaagtggccttaggacctcaattaataaatcaggttttggctctcagc
tcagcagataaaatgtctgatgatgcggtattaaaaaatattattggatttatatgtgtt
agagatattgatttagttcgaggctatatcactattttgagtccacaacctgctccgtta
ccaaaaaagattttatttttgggagacattgaactgataatgtag
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