Parasteatoda tepidariorum (common house spider): 107454988
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Entry
107454988 CDS
T06106
Name
(RefSeq) polyadenylation and cleavage factor homolog 11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107454988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptep03021
]
107454988
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107454988
Transcription machinery [BR:
ptep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107454988
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107454988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
107454988
NCBI-ProteinID:
XP_042909823
LinkDB
All DBs
Position
7:81345882..81406477
Genome browser
AA seq
1411 aa
AA seq
DB search
MAEAVAEEYRSSLADLNFNSKPHINMLTMLAEDNVQYASLIVDTIVNHIKSVPPDLKLPS
LYLVDSIMKNIGGKYIAQFSKHMIELFSSVFEKVDEATRSSLYKLRQTWNDILPKTVLYG
IDCRVNSIDPAWPITAKVTAKSIHVNPKFVSGTANTAQNLIKESEIKKQEEMKKLTDEKA
EREKMLKLIEEKRAQLRLLEAKKLHLQHAKLKGMESVLKQKNQGNSVIHRDPRLKKAVAL
IASAEAGNVPDSSVPASLQSVVVVPNTNSTTSKPHTKDIASNQSNTTSRPSDTPNDPRAK
RNKLATEGSCKSNTALNKKRNLILEESPGDTSNNKKPCKDSLNINSSKALQNNQLLPADN
VSDPRVKSECGNQTSSNQLLDPPKDASKLATKYEDKKETLLDSDERRQPPMPLFLGSEDK
DYRKLPIAVDQSKRPSEILHQTDNKNSSTPIHQNINLPSKEMPNDIREKLHVPAEQINTT
HKVSEFHPTPLHPPDPVNKSITSFQDVMKPPLNIDSSVARGSPIPFTQTFKLDGKDRIIH
FVNKRAFAFMDDKEPHEISFIGTPRNVFVEGLPQSLILSFDQKSHDFDLDGKRNTIQFGT
PSRELYINNRPYEVQFGGPPLLAPLENNKLHHIRVDGPPPQVLIGEKPAYELCETFNKMH
KPSLQNPSLEPPVTSTEKTLPFQDVDMRLKSKPLQPPPFFESTAAKLKDIDWRQAPISEC
QTPSVWNVSQSSNIVPTNSVTNTTAVTLERFPHPSSFPQVTDGNIVNGRMPQTAPWSGRP
PLEPQFSNKLIGPLPPPPRLPMALNSLPPPPPLPNLPPVDVRPTRVSNLPPVDIRPTGLL
NLHTVDVRPTVWKPLPPPPMFPTSVSSGSLPKVPLLPTPHMLPIVSTPSTVNLPLEKPME
PIPPVAAPIDVGSFFEKLVAAGIISKKEPAPSVAADESSSKEKPEDAIKEEKETKIPAIE
LNPKSLKQFYSGLLTSLYKGSQCATCGMRFKNSQGEQYGRHLDWHFRMNRREKDGAKKAF
SRRLFYNVKDWEQFIEIEEAEERAPSYFELQADCISVKKEEAEKIHSVRASECETEKCFV
CGEQFQLFWVEEEEEWHLRNAVRHDNEVFHPACYEDFIKASKSPIADTSREETEDEALDE
KIEETGEKNEEASNKEKEEKNEVRIAETHDVRTEETHEVRTEETHEARTEETRVVKIEEI
HEVKKEINEVGKEENSEEDKDMTSRKEANIPQEVCEEEKMDVEESPIQDDVDVKVPIKEE
PLEDTSNINEPNDVPVSENPTAVNIETTTKIKEEPMDSSDTENIAVENNSPSKIIVYMND
DFLDYGTEEAMDITTNEPSEPNNRVIEDKVMKAEDKVIKAEEVDDRTLVKTEPTSDDVES
DEFRPPTPDPRFDVQPPIFKGTELSALCTIM
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagcagtagctgaagaatatcgatcatccttagcagatctgaatttcaacagt
aaacctcatataaatatgttaactatgcttgcagaggacaatgttcaatatgcttcgttg
attgtagatactattgtcaatcatataaaatcggtacctccagatttaaaacttcctagc
ctctatttagtggattcaattatgaagaatattggtggaaaatatattgctcaatttagc
aaacatatgatagaacttttcagctcagtttttgaaaaggttgatgaagcaactagaagt
tctctttataaattaaggcaaacttggaatgatatattacctaaaactgttttatatggc
attgattgtcgcgttaacagcattgatccagcatggcctataactgcaaaggtgacggca
aaaagtattcatgtgaatccaaaatttgtgagtggcactgccaatacagctcaaaattta
ataaaagaatctgaaataaagaaacaagaggaaatgaaaaagttgactgatgaaaaagct
gaacgtgaaaaaatgttaaaattaattgaagaaaagagagcacagttaaggctcttagaa
gcaaagaaattacatttacagcatgcaaagcttaaaggaatggaatcagttctaaaacaa
aaaaatcagggtaattctgttatccaccgtgatccacgtcttaaaaaagctgtagctcta
attgcctctgctgaagctggtaatgttccagatagctcagttcctgcttctctacaatct
gtagtagttgttccaaatacaaattctactacctcaaagcctcatacaaaagatattgct
tcaaatcaaagcaacacaacttctcgtccatctgatactcccaatgatccaagagccaaa
aggaataaacttgcaacagaaggatcttgtaaaagtaacacagctttaaataaaaagaga
aatttgattctagaggaatctcctggtgatacttccaacaataagaaaccttgcaaagat
tctcttaatataaatagttctaaggctcttcagaataatcaattattacctgctgataat
gtcagtgatccaagagttaaatctgaatgtggcaatcaaacatcctctaaccaattgctt
gatcctccaaaagatgcatcaaaacttgcgacaaagtatgaagacaagaaggaaacacta
cttgattcagatgaaaggagacaacctccaatgcctctttttcttggatctgaagacaaa
gactatcgtaaattgcccatagcagtcgatcaatccaaacgtcctagtgaaatcttacat
caaactgacaataaaaattcatcaactcctattcatcaaaatattaatttgccttccaaa
gaaatgccaaatgatattagagaaaaacttcatgtgccagcagagcaaatcaatacaacc
cacaaagtatctgaatttcatcctacaccactgcatcctcctgatccagttaataaatct
attacaagttttcaggatgtaatgaaacctcctttaaatattgattcctctgtggctcgt
ggatcgcctatacctttcactcaaactttcaaacttgatggcaaagatcggattattcat
tttgttaataaacgagcatttgccttcatggatgataaggaacctcacgaaataagcttc
atcgggacccctaggaatgtttttgttgaagggcttcctcaatcattgattttgagtttt
gatcaaaagtctcatgattttgatctagatggcaaaagaaatactattcagtttggcact
ccctctcgagaactttacatcaataatcggccatacgaagtgcagtttggtggccccccg
ttgctcgccccactagaaaacaacaaactgcatcacattcgagtggacggtccccctcct
caagtattgataggagagaaacctgcatatgaactatgtgaaacctttaataaaatgcat
aagccttcattgcaaaatcctagtcttgagccacctgtgacttctactgaaaagactttg
ccattccaagatgtagatatgcgcctaaagagtaaacctttacaaccaccaccatttttt
gagtctactgcagcaaaattgaaagacattgattggcgtcaagcacctatctcagaatgt
caaacaccttcagtgtggaatgtatctcaaagttcaaatatagttcctacaaactcggta
acaaatactacagctgttactttagaaaggttcccgcatccttcatcttttcctcaagtt
actgatggaaacatagtcaatggcaggatgcctcaaacagcaccttggagcggaagacct
ccccttgaacctcaattttccaataagctgattggtcctctacctccacctcccaggtta
ccaatggctcttaatagtttgccacctcctccaccattaccaaacttgcctcctgtagat
gtaagaccaacaagagtatcaaatttacctcctgtagacataaggccaacaggattatta
aatttacatactgtagatgtaaggccaactgtttggaaacctcttcctccacctcccatg
tttccaacttctgtctcatctgggagtttaccaaaagtaccactacttccaactccacat
atgttaccgatagtcagcacaccctccacagttaatttgccacttgaaaaaccgatggaa
ccaattccacctgtcgctgcacctattgatgttggatccttttttgaaaagctagtggct
gcaggcattatctcaaagaaagaaccagctccttctgttgcagctgatgaaagctcatca
aaagagaaaccagaagatgcaattaaagaagaaaaggaaaccaaaatacctgccatcgaa
ttaaatcctaaaagtctgaagcagttttactctggactcttgacttctttgtacaaaggt
tcacaatgtgcaacctgtggcatgagattcaaaaattcccaaggtgaacaatatggaaga
catcttgattggcatttccgaatgaatcgtagagaaaaagatggtgccaaaaaagccttc
tctcgcagactcttttataacgttaaggattgggaacaatttatagaaatagaagaagct
gaagaaagagctccgagttactttgaacttcaagctgattgtataagcgttaaaaaggaa
gaggctgagaaaattcatagtgttcgagcgagtgaatgtgaaactgagaaatgctttgtt
tgtggggagcagttccagctgttttgggttgaagaagaggaagaatggcatttacgaaac
gctgttaggcatgataatgaggtttttcatccagcttgctacgaagatttcataaaggct
tcaaagtctcctattgctgacacatctagagaagaaacagaagatgaggctctagacgaa
aaaatagaagaaacgggggagaagaacgaagaagcaagtaataaagaaaaagaagagaag
aatgaggtacggatagcagagacacatgatgtacgaacagaagaaacacatgaagtacga
acggaagagacacatgaggcgcgaacagaagagacacgtgtggtaaaaattgaagaaata
catgaggtaaaaaaagagataaatgaggtgggaaaagaagagaattctgaggaagataaa
gacatgacatctagaaaagaagcaaatatcccacaagaagtatgtgaagaagaaaaaatg
gatgttgaagaatctcctatccaagatgatgtagatgtcaaagttcctatcaaagaagaa
cctttagaagacacttcaaacatcaatgaacctaatgatgttccagtcagtgagaacccc
actgccgttaacattgaaacgacaacgaaaattaaagaagagcccatggatagctctgat
accgaaaatattgctgtagagaataatagtccatcgaagattattgtttacatgaatgat
gactttttagattacgggactgaagaggcaatggacattactactaatgaaccttcagaa
cctaacaatagggttatagaagataaagtaatgaaagcagaagataaagtaatcaaagca
gaggaagtagatgataggactttagtgaaaacagaaccgacatcagatgatgttgagagt
gacgagttccgtccgccaactccagaccctaggtttgatgttcaaccgccaatttttaaa
ggaacagaattgtctgctctatgtaccataatgtag
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integrated database retrieval system
