Parasteatoda tepidariorum (common house spider): 107455133
Help
Entry
107455133 CDS
T06106
Name
(RefSeq) exosome complex component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107455133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107455133
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107455133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
DUF6479
Motif
Other DBs
NCBI-GeneID:
107455133
NCBI-ProteinID:
XP_015928084
LinkDB
All DBs
Position
8:49645922..49671235
Genome browser
AA seq
832 aa
AA seq
DB search
MDDSVIEADEEESFFVPGFKDASSFSQTVLRTVVGATKASNELPSSGDNFDYYSTFPGFK
SVLQMKGKSILSLMTSIIQAHGIREKFQGLELEDQLDLLIEVNDSILENASNCLDEASGE
KKSEEDLIIAVKPPTAINTSWNKKQFNLGSPSSYKLLTAKNISRPQLLFKDKIDNSNTIF
VPVIKEKPNSIKPLAITLEKNEDKEEFCHPYELEIEKFNPEEEHLQEAELVFPKSLEETP
YMFVDTEMLLKEMCQELKIEKEIAVDLEHHSYRSFQGFTCLMQISSHSKDYIVDVLALRS
QLPVLNDIFTDPKIVKVLHGADMDILWLQRDFGVYVVNMFDTGQAARVLHFAHLSLSYLL
KHYCKLDVDKKFQLADWRIRPLPEEMIKYAREDTHYLLYVYDCLKNDLINQGNEMKNLLH
STFERSKSICLKKYQKPLFSDDKFMELYKKSRKMFNGKQLYCLKEIYSWRDRMAREYDES
LLYVLPNHMLLQIAEALPREQQGILACCNPIPPLVKQQLNELHSIILKANEYSLKELESL
YYHQQAQIPKSSNNIDLSSLIDCPHDIHHLEEKKVHNTESSSSEKMLPLRSQNHDSELLL
KKKPSLSALFTKDLKISKPSENMTAEKKLPQRVIEAIQKLKSPFERFKVTTELQSNSLKK
PEKNVVNLIVNHNEETANDSSLHAREENAESDVEEVVEELDTSEMPQADVSCEIISSTPI
RKRKNKKKRKPQPDITLITTPESSGPQSKKSRSPEVVTVDDDSFTPYDYSQSDYNKFSGQ
PNTSFKSKKKKNQNYQTPRPYFGKNRKHAKQASFNRDGSGSSTGPSTQWPKK
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggatgattctgtcattgaagcagatgaagaagagtcattctttgttcctggttttaaa
gacgcttctagtttttcacaaactgtgcttcgaactgttgttggggcaacaaaagcttca
aatgagctaccctcttctggtgataactttgattattacagtacatttccaggctttaaa
tcagtattgcaaatgaaaggaaaatctatattatctttaatgacttccattatacaggct
catgggattcgtgaaaaatttcaaggtcttgaacttgaagatcagttagatcttttaata
gaagtaaatgactcaatattggaaaatgcaagtaactgtttggacgaagcttctggtgaa
aagaaatctgaagaagatctcattattgctgttaagccacccactgctattaatacaagt
tggaacaaaaagcaatttaacttaggaagtccgtcaagttacaagttattgacagccaaa
aatatttcaagacctcagctgttatttaaggataaaattgataacagcaacacaattttt
gtgcctgttatcaaagaaaagcccaattctataaaacctcttgctatcactctagagaaa
aatgaggataaagaagagttttgtcatccatatgaattagaaattgaaaaattcaatcct
gaagaggagcatctccaagaagctgaattagttttccctaaatccttggaggaaacccca
tatatgtttgtcgacactgaaatgctattgaaagaaatgtgccaggaattaaaaatagaa
aaagagattgcggtagatttagagcatcattcatatagaagtttccaaggctttacttgc
ctaatgcaaatatcctctcacagtaaagattacatagtggatgtcctagctcttagaagt
cagttgcctgttttaaatgatatttttacggaccctaagattgttaaggttctccatggt
gcagatatggatattctctggttacagagggacttcggtgtctatgttgtaaatatgttt
gatacaggacaagctgccagagttctccattttgcacatttatctctatcttatctcctg
aaacattattgcaaacttgatgttgataaaaagttccagttagcagattggcgtatcagg
cctttaccagaagaaatgatcaagtatgctagagaagacactcattacttactttatgtt
tatgactgtttaaaaaatgacttaatcaatcaaggtaatgagatgaaaaatctgttgcat
tctacctttgaaagaagcaaatcaatttgcttaaagaaatatcaaaagccattattcagt
gatgacaaattcatggaactttataaaaaaagtagaaaaatgttcaatggtaaacagttg
tactgtttaaaagaaatttattcctggagagatcgaatggctcgagaatacgatgaaagt
cttttgtatgtgttgccaaaccacatgctgctgcaaattgctgaagctctaccaagagaa
caacagggtatcttagcttgttgcaatcctatcccacctcttgtgaaacagcaacttaat
gagctgcattctattattttgaaggctaatgaatactcattaaaagagcttgaatcctta
tattatcatcaacaagctcaaattccaaaatctagtaataatattgatctaagtagttta
attgattgtcctcatgatatccatcatttagaagaaaagaaagtgcacaatactgaatca
agctcatctgaaaaaatgctgccacttagatcacaaaatcatgattcagaattattactt
aaaaagaagccatctctaagtgctttgtttacaaaagatcttaagatatctaagccttca
gaaaacatgacagctgaaaaaaaattaccccagagagtaattgaagccattcagaaactc
aaaagtccatttgaaaggtttaaggtgaccacagaacttcagagcaatagtttgaagaaa
ccagaaaaaaatgttgttaatcttattgttaaccataatgaagagactgcaaatgattct
tcattgcatgcaagagaagaaaatgctgaaagtgatgtggaagaagtggtggaagaactt
gatacgtctgaaatgccacaggctgatgtttcatgtgaaattataagctcaacacccatt
agaaaaaggaaaaacaagaagaaacgaaaacctcaacctgatattactcttattacaact
ccagaatcatctggtccacaaagcaaaaaatctagatctcctgaagttgtaactgtagat
gatgatagcttcacaccctatgattacagtcagtcggattacaacaaattttctggtcaa
ccaaatacaagcttcaaatctaaaaagaagaaaaaccaaaactatcaaacaccaagacca
tattttggaaaaaataggaaacatgctaagcaggcctcatttaacagagatggaagtggc
agtagtactggacctagtacacaatggccaaaaaagtaa
DBGET
integrated database retrieval system
