Parasteatoda tepidariorum (common house spider): 107455416
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Entry
107455416 CDS
T06106
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107455416
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptep00536
]
107455416
Glycosaminoglycan binding proteins [BR:
ptep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107455416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
FnI_RECK
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
107455416
NCBI-ProteinID:
XP_042898112
LinkDB
All DBs
Position
X2:complement(9225897..9294855)
Genome browser
AA seq
1482 aa
AA seq
DB search
MGAIKEQTFLLCVLWTILIIGNNAQYYDEIDDIDDATTCLFDGVRYADQEEWKPDACTSC
RCYLGNTVCDTEECPDLECRTQKFIPLGKCCPVCADDEAAFGPDETVIQRPRPSFPVGVP
AIGSPDHVVVPVVGPPGEHGEPGTPGSPGYRGTPGQPGSHGTPGEPGPPGPPGNAGWNNW
FNHLSAQSGDKGPAPDAFHFMQAQVGPVGPRGTPGPPGQPGPQGFQGIRGESGDSGQAGS
PGTPGPRGLPGLPGKDGESGEDGRPGPPGPPGPAGSRGTPGLPGLPGAKGHRGFPGLDGS
KGEQGTAGEKGVVGVPGKMGVVGPMGPPGPRGERGREGTPGPPGLRGVDGLPGQTGPTGP
IGRSGPPGFPGSPGLKGEAGALGAKGNQGSQGVRGEAGTPGLNGERGPQGAPGNDGLPGE
RGAPGDRGANGISGFPGAAGPPGLTGSQGLPGPKGSQGNRGEPGIRGEGGRKGEVGTVGP
RGLPGVQGNQGKRGKAGPPGPVGAPGVPGERGPSGLRGLPGPEGAAGMKGLTGDRGLEGP
SGPKGAQGEGGRQGPPGLQGLRGTPGAHGITGKDGSPGDRGAPGLDGKQGPPGPQGTQGV
PGLIGLPGMKGERGERGIDGLTGLPGLQGRRGDAGKDGLPGLQGARGPSGDTGAKGEPGP
QGSRGFQGIPGLAGGIGQPGKNGEPGTPGVAGLVGSQGSRGERGFPGERGLMGLPGPQGI
RGEVGPAGKDGAIGPRGEKGPKGISGASGLVGLPGQRGDFGPSGPKGERGDSGPMGLNGP
QGRQGEPGPMGLVGLTGLQGETGEKGALGQVGPQGNPGPQGIQGDKGQQGAQGQQGFPGP
IGIPGPRGIKGDQGLIGPKGETGDNGLPGLPGISGIQGLQGITGLTGAKGNDGKKGHAGF
PGTPGLPGNAGTPGKQGNPGPSGSVGSPGLTGHKGDSGRHGAPGPAGNPGIPGIPGAKGD
VGSEGRPGPQGPIGQPGPIGDKGPPGLPGLQGRNGPHGAKGSQGERGPEGKPGPDGNPGL
QGLMGLPGPQGPTGETGPEGPQGKDGPPGAPGRTGDKGPSGPPGQTGAPGLPGLQGMPGS
SGPSGSPGDRGERGERGIQGPMGQQGPRGLPGPMGESGPKGPKGDIGHTGEKGHRGILGL
QGLPGPVGPPGDKGMTGDPGPPGMKGPPGPKGPIGNPGNSGPPGMLGIPGPRGPTGESGR
DGTPGLTGPPGPPGPPGSGFQYDMAALAALMGQGQVKGPDPILGDEPNLLSAAPEEKKRL
IFQFYEKLVRDYADSRKPTGTKDSPAKSCKHLSEAQPNLSSGMYWIDPNEGTIKDSIEVF
CNMNTKETCIIPNPEEIPKGVHIKGRGQKTWFSEMESGSLFHYKIDHAQLTFLQLLSESA
SQNVTYHCRNSIAYYDAKQKFLKRAVKLMAYNDVELTADGNPRFVYNALFDGCQIRGNEW
SYTTLTYSTDKPQRLPIVDIAPRDVGLKNQEFGITIGQACFV
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcaattaaagaacaaacttttttgctatgtgttttatggactattctgattatt
ggaaacaatgcacaatattacgatgaaatagatgatatcgatgatgcaacaacttgttta
tttgacggtgtaagatatgctgatcaagaagaatggaaaccagatgcttgcacgtcttgt
agatgttatttaggaaatactgtatgtgatacagaagaatgtcctgatttagaatgtcga
actcaaaagtttattccactaggaaagtgctgtcctgtctgtgcagatgatgaggctgca
tttggtccagatgaaactgtaatccaaagacctcgacctagctttcctgttggagtacca
gcaatcggatccccagatcatgtagttgttccagttgttggaccacctggtgaacatgga
gaaccgggaacccctggatcacctggatatagaggaacccccggccaacctggttcacat
ggcacccctggtgaaccagggcctcctgggccacctggtaatgctggatggaataattgg
tttaatcatttgtctgctcaaagtggtgataaagggcctgctccagatgcttttcatttc
atgcaagctcaagttggacctgttggaccccgaggtactcctgggccacctggacagcca
ggtcctcaaggctttcaaggaattcgtggggaatcaggtgactctggacaagctggctca
cctggcacacctggaccaagaggactaccaggattgcctggaaaagacggagaatcagga
gaagatggacgtcctggaccaccaggccctcctggacctgcaggttctagaggtacacct
ggacttccaggactaccaggagccaaaggacatagaggattcccaggattagatggttct
aaaggagaacagggaactgcgggtgaaaaaggagttgttggggttcctggaaagatgggt
gttgtaggaccaatgggacctcctggtccaaggggagaacgaggacgagaaggcacacca
ggaccacctggcttaagaggagttgatgggttacccggtcaaacaggaccaactggacca
attggaagatctggaccaccagggttccctggatctcctggattaaaaggtgaagcagga
gctttaggtgctaagggaaatcaaggtagccaaggtgttagaggagaagctggtactcca
ggactaaatggtgaaagaggacctcaaggtgctcccgggaacgatggtcttcctggtgaa
agaggtgctcctggagatagaggagcaaatggtatttctggattcccaggtgctgctgga
ccccctggtcttactggaagtcaaggcttgcccggacctaaaggttcacagggtaataga
ggtgagcctggaattagaggagaaggtggaagaaaaggtgaagttggaactgtagggcct
agaggtttaccaggagtgcaaggaaatcaaggaaaaagaggaaaagctggtcctcctggc
cctgtaggagctcctggtgttccaggtgaaagaggaccatcagggctcagaggacttcct
ggccctgaaggtgctgcaggcatgaaaggtcttactggggatcgaggtttagaaggccca
tcaggtcctaagggtgctcagggtgaaggtggacgacaaggtcctcctggtcttcaagga
ttgcggggaactccaggagcacatggaatcactggaaaagatggatctcctggagataga
ggagctcctggattagatggaaaacaaggacccccaggccctcagggtactcaaggggtt
cctggattaataggacttcctggaatgaaaggagagaggggagaaagaggtatagacggt
ttgacaggtttaccaggtcttcaaggaagacgcggtgatgctggaaaagatggtttgcct
ggcttacaaggagctcggggtccatctggtgatacaggtgcaaaaggtgaacctggtcct
caagggtctcgtggctttcagggtatacctggtcttgcgggaggaattggtcagccaggt
aaaaacggagaacctggcacacctggagttgcaggtttagttggatctcaaggaagtcga
ggagaaagagggtttcctggggaaagaggactgatgggtcttcctggacctcaaggaatt
cgtggtgaagttggacctgcaggaaaagatggagctattggacccaggggagaaaaaggt
cctaaaggaatatcaggagcatcaggcttagttgggcttcctggtcaaagaggtgatttt
ggtccttctggccctaaaggagaaagaggtgattctggaccaatgggactcaatggccct
cagggtagacaaggagagcctggtccgatgggattagttggtctcactggtttacaagga
gaaacaggagagaagggtgcacttggtcaagttggacctcaaggaaatccaggtcctcaa
ggtattcagggtgataaagggcaacaaggtgcgcagggtcaacagggatttccagggccg
attggtatacctggacctcgaggaataaagggtgaccaaggattgattggaccaaagggt
gaaacaggagataatggtttacctggtctccctggaatttctggtatacagggtctgcaa
ggaattacaggattaactggagcaaaaggaaatgatgggaaaaagggacatgctggattt
cctggaacacctggccttccaggaaatgcaggaacaccaggtaagcaaggcaatccagga
ccttctggctctgttggctccccaggtttgacgggtcacaaaggtgattctggaaggcat
ggtgctccaggccctgcaggtaatcctggaattccgggtattcctggtgctaaaggtgat
gtaggatctgaaggaaggcctgggccacaaggtcccattggacaacctggcccaattgga
gataaaggtccacctggtttacctggtctccaaggaagaaatggtccacatggagcaaaa
ggatcacagggtgaaagaggtcctgagggcaagccaggtcctgatggaaatcccggcttg
caaggattgatgggattacctggacctcaaggtcctactggtgaaacaggtcctgaagga
cctcaaggcaaagacgggcctccaggtgcccctggtagaactggtgacaaggggccttct
ggtcccccaggacaaacaggtgctccaggcttgccaggtcttcaaggtatgcctggttct
tccgggccatctggatctcctggagatcgtggggaacgtggagagagaggtatacagggc
cctatgggacaacaaggtcctcgagggttacctggtcctatgggagaatctgggccaaaa
ggtcccaaaggtgatattggacatactggagagaaaggacacagaggaattcttggatta
caggggcttcctggacctgtaggcccacctggtgacaaaggtatgactggtgatcctgga
ccacctggaatgaagggtcctcctggtcctaaaggacccattggtaatcctggaaattct
ggacctccaggaatgttaggaataccaggacctagaggacctaccggtgaatctggaaga
gatggaactcctggtctaactgggcctccagggccacctggtcctcctggttccggattt
caatatgacatggcagcattagctgctcttatggggcaaggacaagtaaagggaccagat
ccaatactgggtgatgaaccaaacctactgtcggctgctccagaagaaaagaaacgttta
atattccagttctatgaaaaattggtaagagactatgcagattctagaaagccaacagga
actaaagactcacctgctaaatcctgtaaacatttatcagaggctcaaccaaatctttct
agtggtatgtattggattgatccaaatgaaggtactatcaaagattccattgaagtattt
tgtaacatgaatacaaaagaaacatgcataatccctaatcctgaagaaattccgaaaggt
gtgcatattaaaggtcgagggcagaaaacttggtttagtgaaatggaatcaggttctctg
tttcattataaaattgatcatgcacaattaacattccttcaacttctgagtgaaagtgca
tcacaaaatgttacctatcattgccgaaactcaattgcctattatgatgctaaacaaaaa
ttcctaaaaagagctgtgaagctgatggcctacaatgatgtagaacttactgcagatggg
aatccaagatttgtctacaatgctttatttgatggatgccagatacgtggtaatgaatgg
tcctatacaactctaacatattcaacggataaacctcaaagactgccaattgttgacata
gcacctagagatgtaggcttaaaaaatcaagaatttggcattacaattggtcaagcctgt
tttgtttaa
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