Parasteatoda tepidariorum (common house spider): 107456014
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Entry
107456014 CDS
T06106
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep03018
RNA degradation
ptep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107456014
09123 Folding, sorting and degradation
03018 RNA degradation
107456014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptep03019
]
107456014
03041 Spliceosome [BR:
ptep03041
]
107456014
Messenger RNA biogenesis [BR:
ptep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107456014
mRNA degradation factors
5'-3' decay
Lsm complex
107456014
Spliceosome [BR:
ptep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107456014
Complex C
U2 snRNP components
107456014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
107456014
NCBI-ProteinID:
XP_042907118
LinkDB
All DBs
Position
8:1500944..1507080
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTEISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAAQSKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttactcatttttcaagtctcttgtggggaaagatgtggtagtagagctaaaa
aatgacttaagtatttgtggaactctgcattctgttgatcagtatttgaatattaagtta
actgaaattagtgtgacagatcctgaaaaatatcctcatatgctctcagtaaagaattgt
tttattagaggatctgtggtgaggtatgtccaacttccagccgatgaagttgacacacaa
ctgcttcaagatgctgcaaggaaagaagctgctcaaagcaaacaatga
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