Paraburkholderia terrae: C2L65_04350
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Entry
C2L65_04350 CDS
T05318
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2L65_04350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pter03019
]
C2L65_04350
03009 Ribosome biogenesis [BR:
pter03009
]
C2L65_04350
Enzymes [BR:
pter01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2L65_04350
Messenger RNA biogenesis [BR:
pter03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2L65_04350
Ribosome biogenesis [BR:
pter03009
]
Prokaryotic type
rRNA processing factors
C2L65_04350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AUT58915
UniProt:
A0A2I8EH45
LinkDB
All DBs
Position
1:complement(960836..964150)
Genome browser
AA seq
1104 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGIDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMSQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSQGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLVPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEK
PAPSAPVRTPAPAAATVEVKPATGGFIGWLKGLFGVQPAAPAPAPAPVEKTAKPARGERT
ERGERTGERGGDRNRNRRNGAGGRDAAGRGEGAATQGRQGQPSQRGERQEREPREAREPR
GGREPREGREPREAREPREVRPERVERGQERAERAETAEATRGERQDRADRGERRERGER
AERGERRKQQPEAADALSQNDAQADVAAQAQANLMGGAAPIDDARDGEERRRRRRGRRGG
RRERDEEGVNVNTAADVAEAEGETAVAASAETPVRAPEHTGRHEAQPQAVEAVQQHPAQE
VKPVEVVVAAVATGAAVVSELHASAETPALAVEKAAKAEAVVPADEAPVATHTEAAVEEP
VAVEPQAVAPVATVQAPVEVPAPVETVAAAPVAEAPVVAEPVAEPVAAAPAPAAPAEAAQ
PVVEAPVATQPVVEPVVQAAAEPVVQPVAEPVADVAQAQPAAEPAVTEAVTEPATQAAPI
AAAAEPQPVRTNGASAGRQSTQGLETMLESAGLVWVNTDSDKLRVAQEAAAQAVKPARAP
RERKPLPAADTTPMQQVETAKQPQ
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaagggcatcattacccgcatcgagccgtcgctcgaagcctgtttcgtcaactac
ggcgaagaccgccatggttttctcccgttcaaggaagtcgcccgccagtacttccgcgaa
ggcatcgacatgcgctcggcgcgcatccaggacgccctcaaggaaggccaggaactgatc
gttcaggtcgagaaggaagaacgcggcaacaagggcgcagccctcaccacgttcatctcg
ctcgccggccgttacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgaccgccaggaactgcgcgaaacgatgtcccaactgcaactgccc
gaaggcatgagcatcatcgcgcgcacggcgggtatcggccgtagcgcggaagagctgcag
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaagccgcgtcgcaaagcggc
tcgcaaggtcagccgatgctgatctatctcgaatcgagcctcgtgatccgcgcgattcgc
gactacttccagccggacatcggcgaaattctgatcgacaccacggaaatccatgaccag
gcacgcgccttcatggacatcgtgatgccggacaatgtcaacaaggtgaagcggtatcac
gacgacgtgccgcttttctcgcgtttccagatcgaacaccagatcgaaacggcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacacggaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggccacg
cgcacgaacctcgaagcggccgacgaagtcgcgcgccagttgcgcctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgcgcgcgcgtccagatgggcaagatctcg
cgcttcggcctgatggaactgtcgcgccagcgtctgcgtccggcgctgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgcccgtcgaagtcacggccttcctgctcaacgaaaagcgctcggaaatcaac
aagatcgagtcgcgcttcaaggtcaacgtcgtgctggtgccgaacaagcacctcgacacg
ccgcactacaagctcgagcgtctgcgtcacgacgacgcgcgcctcgacgatccgcgcgcg
tcgtggaagatggccgaagaagcagcgcgcgaactggaatcggaaacgggatacagcaag
cgcgccgaagaggtgaagccgaagcaggaagcggccgtcaagggcatcacgcctgaaaag
ccggcgccgagcgcgcccgtgcgcacgcccgctcccgctgccgctaccgttgaagtcaag
cctgcgacgggcggtttcatcggctggctgaagggtctgttcggtgtgcaaccggcggct
cccgctcccgcgcccgctcctgtcgagaagacggcgaagcccgcacgcggcgaacgcacc
gagcgtggtgagcgcacgggcgagcgcggcggcgatcgcaaccgcaaccgtcgcaacggc
gcaggtggccgcgatgcggcaggccgtggcgaaggcgcggcaacgcaaggccgtcagggt
caaccgtcgcagcgcggcgaacgtcaggaacgcgaaccgcgtgaagcacgtgaaccgcgt
ggcggccgcgagccgcgcgaaggccgcgagcctcgtgaggcacgcgaaccgcgcgaggta
cgtccggagcgcgtcgaacgcggtcaggagcgtgcggaacgcgcagaaaccgctgaggca
acgcgcggcgagcgccaggatcgggcggaccgtggcgagcgccgtgagcgtggcgaacgc
gccgaacgtggcgagcgtcgcaagcagcagcccgaagcagccgacgcgctgagccagaac
gacgctcaggccgatgtcgccgcacaggcgcaagcgaatctgatgggcggcgctgctccc
atcgacgacgcgcgtgatggcgaagagcgtcgtcgtcgccgtcgcggccgccgtggtggc
cgtcgcgagcgtgacgaggaaggcgtgaacgtgaacacggccgccgatgtcgcggaagcg
gaaggtgaaacggctgtggcagcatcggcggaaacgcccgtgcgcgcgccggaacacacg
ggccgtcacgaagcgcagccgcaagcggtcgaagctgttcagcaacacccggcacaggaa
gtgaagccggtcgaggtcgtcgtggcagccgtcgcgacgggcgccgccgtggtcagcgag
ttgcatgcatcggctgaaacgccggcgctggctgtcgaaaaggctgcgaaggcggaagcc
gtcgtgcccgccgacgaagcgcctgttgcgacgcacacggaagcagccgtcgaagagccg
gtcgctgtcgagccgcaagcggttgcgcctgtcgcaacggtgcaagctcccgttgaagtg
cccgcgccggttgagacggtagcggcagcacccgtcgccgaagcgcctgtcgttgccgag
cctgtagccgagccggttgcagcggctccggccccggcagcgcctgcggaagcagcgcag
ccggttgtcgaagcacccgttgcaacccagcccgtcgtcgagccggtggttcaggccgcc
gccgagccggtcgttcagccggtcgcggaacccgtcgcggatgtcgcgcaagcgcaaccc
gcagcggaaccggccgtaacggaagccgtaacggaacccgcaacgcaagccgcgccgatc
gccgcagcagccgagccgcaacccgttcgcacgaacggcgcttcggccggccgtcagtcg
acgcaaggcctcgagacgatgctggaaagcgccggcctcgtctgggtcaacaccgactcg
gacaagctgcgcgtcgcgcaggaagccgccgcgcaggcggtgaagcccgcacgcgcgccg
cgcgagcgcaagccgcttccggccgccgacacgactccgatgcaacaggtcgaaacggca
aagcagccgcagtaa
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