Paraburkholderia terrae: C2L65_08340
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Entry
C2L65_08340 CDS
T05318
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2L65_08340 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pter03400
]
C2L65_08340 (mfd)
Enzymes [BR:
pter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2L65_08340 (mfd)
DNA repair and recombination proteins [BR:
pter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C2L65_08340 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AUT59603
UniProt:
A0A2I8EJ19
LinkDB
All DBs
Position
1:1861628..1865113
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AA seq
1161 aa
AA seq
DB search
MPDIAASTQSSSTPVALVKAGQRFVFDGTHGSSDALLIARYHLAHKTQMPLLAVVCASAV
DAQRLTQELAFFAPEARVRLLPDWETLPYDSFSPHQDLVSERLATLHDLGEARCDILLVP
ATTALYRMPPASFMAAYTFSFSQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLI
DLFPMGSPLPYRIDLFDDQVDSIRAFDPDSQRSLYPVKDVRLLPGREFPFDEAARTAFRS
RWREVFEGDPSRASIYKDIGNGVPSAGIEYYLPLFFEETATLFHYLPEGAQLAFVGDLDA
AIRRFTADTKQRYNFLSHDRDRPILEPQRLFLSDEDFFTFAKPFARLSLPGNAGGGWAVP
LPNLAIDRHADDPVAALRAWLATTPNRVLFAAESAGRRETIAQLLADNALRPTSADSYGD
WLTSDARFALGVAPLANGFAIPGEGVAILTETELYGPLARRAGRRRQEQASNVDSMVRDL
SELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYQGDSKLYVPVAQLHVISRYSG
ADPESAPLHALGSGQWEKAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFA
ESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAL
LSPTTLLAEQHTQTFTDRFSDWPVRIAELSRFKSTKEVSASIQQINEGTVDIVIGTHKLL
SSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFS
VIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVP
EARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRSDKFGLA
QLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRG
TGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHTPAILPA
DYCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRFGKMPPQAHALVETHRLRLAAKPLG
ISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHIKLAGQDKLRIESRSPDFTVRVATV
KETLRALGTPVKGAADRRVAS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacatcgccgcatccacgcagtcctcctcaacgcccgtcgcgctggtcaaggcc
ggccagcgtttcgtgttcgacggcacgcacggctcgtccgacgcgctgctgatagcgcgc
taccacctcgcgcacaagacgcagatgccgctgctggccgtcgtctgcgcgagcgccgtc
gacgcgcagcggctgacgcaggaactcgcgttcttcgcgccggaagcgcgcgtgcgcctg
ctgcccgactgggaaacgctgccgtacgactcgttctcgccgcaccaggatctcgtctcc
gagcgtctcgcgacgctgcacgacctgggcgaagcacgctgcgacatcctgctcgtaccg
gcgacgactgcgctgtaccggatgccgcccgcctccttcatggcggcctacaccttttcg
ttctcgcagggcgaacgtctcgacgaagcgaagctgaaagcgcagctgacgctggccggc
tacgagcacgtgagccaggtcgtgcgacccggcgaatactgcgtgcgcggctcgctgatc
gacctctttccgatgggctcgccactgccataccggatcgacctgttcgacgaccaggtc
gattcgatccgcgcgttcgatcccgattcgcagcgcagcctgtatcccgtgaaggacgtg
cggctgttgcccggccgtgagtttccgttcgacgaagccgcgcgcaccgcgtttcgcagc
cgctggcgcgaagtgttcgagggcgatccgagccgtgcgtcgatttacaaggacatcggc
aacggcgtgccgtcggcgggtatcgaatactatctgccgctgttcttcgaagagacggcg
acgctctttcactacctgcctgaaggcgcgcaactcgcgttcgtcggtgatctggacgcg
gccatccggcgcttcaccgcagataccaagcagcgctacaacttcctgtcgcacgaccgc
gaccggccgattctcgaaccgcagcgcctgttcctgtcggacgaagatttcttcacgttc
gccaaaccgttcgcgcgcctgtcgttgcccggcaatgcgggcggcggctgggccgtgccg
ctgcccaatctcgcgatcgaccgccacgccgacgatcccgtcgccgcattgcgcgcgtgg
ctcgccacgacgccgaaccgcgtgctgtttgccgcggaatcggcgggccgccgcgagacg
atcgcgcaactgctcgccgacaacgcgctgcgccccacttccgccgacagctacggcgac
tggctgacctccgacgcgcgcttcgcgctcggcgtcgcgccactcgcgaacggcttcgcg
attccgggcgaaggcgtcgcgatcctcactgagacggaactgtacggccccctcgcaaga
cgcgcaggacgccgtcgccaggaacaggcgagcaatgtcgattcgatggtgcgcgacctg
tcggagctgaaggtcggcgacccggtcgtgcattcgcagcatggtatcggccgctacatg
ggcctcgtgacgatggatctcggagaaggtgaaaccgagtttctgcacctcgaataccag
ggcgacagcaaactgtatgtgcccgtcgcgcaactgcatgtgatctcgcgctacagcggc
gccgatcccgaaagcgcaccgttgcacgcgctcggttcgggccagtgggaaaaggccaag
cgcaaggccgcgcagcagatccgcgataccgccgccgaactgctgaacctctatgcgcgc
cgcgccgcgcgcgaaggccatgcgttcgcgctcgaaccacgcgattacgtgaagttcgcc
gagagcttcggtttcgaggaaacgcccgaccaggccgctgccattgccgccgtgatcggc
gacatgacgagcggcaagccgatggaccgcctcgtctgcggcgacgtcggtttcggcaag
acggaagtcgcgctgcgcgcggcgttcatcgcggtgatgggtggcaagcaggtcgcgctg
ctttcacccaccacgctgctcgccgaacagcacacgcagaccttcaccgaccgcttctcc
gactggcccgtgcgcatcgccgaactgtcgcgcttcaagagcacgaaggaagtcagcgcg
tcgatccagcagatcaacgaaggcactgtcgatatcgtgatcggcacgcacaagctgctg
tcgtcggatgtgcagttcaagcggctggggctcgtcatcatcgacgaggaacaccgtttc
ggcgtgcgccagaaggaagcgcttaaagcgctgcgcgccgaagtcgacgtgctcacgctc
accgcgacgccgattccgcgtacgctcggcatggcgctggaaggcttgcgcgatttctcg
gtgatcgcgacggcgccgcaaaagcgcctcgcgatcaagaccttcgtgcgtcgcgaagag
gacggcgtgatccgcgaagccatgctgcgtgaactgaagcgcggcggccaggtgtacttc
ctgcacaacgaagtcgagacgattgaaaaccgccgacagatgctcgaagcactggtgccc
gaagcgcgcatcgcggtggcgcacggccagatgcacgagcgcgaactcgaacgcgtgatg
cgcgatttcgtcgcgcagcgcgcgaacgtgctgctctgcacgacgatcatcgaaacgggc
atcgacgtgccgagcgcgaacacgatcctgattcaccgctccgataaattcggtctcgcg
cagttgcaccagttgcgcggacgcgtcggccgttcgcatcaccaggcatattcgtatctg
ctcgtacacgatccgcaaggcctgacgaagcaggcgcaacggcggctggaagccattcag
cagatggaagaactcggcgcgggcttctatctcgcgatgcacgacctcgaaattcgcggc
acgggcgaagtgctcggcgacaagcagtcgggcgagattcacgagatcggcttccagctt
tacaccgacatgctgaacgacgccgtcaaggcgctgaagaacggcaaggagccggacctc
accgcaccgctggcggcgacgaccgagatcaatctgcacacgcccgccatcctgcccgcc
gactattgcggcgacgtgcaggagcgtttgtcgctgtacaagcggctggcgaactgcgag
cacaacgattccatcgacggcattcaggaagagctgatcgaccgcttcggcaagatgccg
ccgcaggcgcatgcgctcgtcgaaacgcatcgcttgcgcctcgccgcgaagccgctcggc
atctcgaagatcgatgcgggcgaagctgtgatcggcctgcagttcattccgaatccgccc
atcgacgcgatgcggatcatcgagatggtgcagaaacacaagcacatcaagctcgcgggt
caggacaagctgcgcatcgaaagccggagtcccgatttcaccgtgcgtgtcgcgaccgtg
aaggaaacgttgcgcgcgctcggtacgccggtgaaaggcgcagcggatcgccgcgtcgct
tcataa
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integrated database retrieval system
